Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,788,154 – 9,788,265 |
Length | 111 |
Max. P | 0.681524 |
Location | 9,788,154 – 9,788,265 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -38.30 |
Consensus MFE | -22.44 |
Energy contribution | -23.14 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.40 |
Mean z-score | -2.02 |
Structure conservation index | 0.59 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9788154 111 - 27905053 GCCCAAGGAAAAGUUACGCGCGGCGAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGUAUGGCCCGUCUGAUCACUUUCUUGGGUCAGAUUUCAUAUUUAGGCCACAA ((((..((((...(((.(.(((((....)))))).))).))))..))))(.((.((((((..(((((((...((......)).))))))).....))))))...))).... ( -39.80) >DroSec_CAF1 1516 111 - 1 GCCCAAGGAAAAGUUACGCUCGGCAAAUGCCGCCUUGAAUUCUAAGGGCGAGCAGAUAUGCAUGGCCCGCCUGAGCACGUUCCUGGGUCAGAUUUCCAAUUUAGGCCACAA (((.(((((((......(((((((....)))(((((........))))))))).........(((((((...(((....))).)))))))..)))))...)).)))..... ( -36.70) >DroSim_CAF1 1524 111 - 1 GCCCAAGGAAAAGUUACGCUCGGCAAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGCAUGGCCCGCCUGAGCACGUUCCUGGGUCAGAUUUCCAAUUUAGGCCACAA (((.(((((((......(((((((....)))(((((........))))))))).........(((((((...(((....))).)))))))..)))))...)).)))..... ( -36.70) >DroEre_CAF1 27148 111 - 1 GCCCAACGAAAAGUUACGAGCGGCAAAUGCCGCGCUGAAUUUCAAGGGCGAGCAGAUUUGUCUGGCCCGACUAAGCACCUUCUUGGGUCAGAUUUCAAAUCUAGGUCACAA ((((...((((..(((.(.(((((....))))).)))).))))..))))((.((((((((((((((((((..(((...))).))))))))))...))))))).).)).... ( -42.90) >DroYak_CAF1 27902 111 - 1 GCCCAAGGAAAAGUUACGCGCGGCAAAUGCCGCCCUGAAUUCAAAGGGCAAGCAAAUUUGUGUGGCCCGACUAAGCUCCUUCUUGGGUCAGAUUUCAGAUUUAGGCCACAA ((((...(((...(((.(.(((((....)))))).))).)))...))))...........(((((((..((((((......)))))(((........))))..))))))). ( -36.60) >DroPer_CAF1 1293 109 - 1 G--CCAGGAAAAGGUGCGGAAGGCCAGUGCCGCCUUGCUGUCCAAAGGAAAGCAGCUAGGCGAAGUGGAGCUGACAACGUUCAUGGGUGAUGUGUCCUAUUUGGGCCACAA (--((..(((....(((((....(((.(..(((((.(((((((...))...))))).))))).).)))..))).))...)))...)))..(((((((.....))).)))). ( -37.10) >consensus GCCCAAGGAAAAGUUACGCGCGGCAAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGCAUGGCCCGACUGAGCACGUUCUUGGGUCAGAUUUCAAAUUUAGGCCACAA .....................(((....((((((((........)))))).))(((((((..(((((((..............))))))).....)))))))..))).... (-22.44 = -23.14 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006