Locus 3625

Sequence ID 3R_DroMel_CAF1
Location 9,785,381 – 9,785,482
Length 101
Max. P 0.694341
window5835

overview

Window 5

Location 9,785,381 – 9,785,482
Length 101
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 75.09
Mean single sequence MFE -28.45
Consensus MFE -21.77
Energy contribution -22.38
Covariance contribution 0.61
Combinations/Pair 1.10
Mean z-score -0.83
Structure conservation index 0.77
SVM decision value 0.34
SVM RNA-class probability 0.694341
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9785381 101 - 27905053
GGACGUGAUGCCGGGAAAGUCGGUGAACAUGGUGUCACCCGAAAUGUACUCGGCGGUAGCGUCUGCAAAG-UA----------UUU--CAAUAUCGGAUGAGUCAGAAAAAUGU
((((((..(((((((....(((((((........))).))))......)))))))...))))))......-..----------(((--(....((....))....))))..... ( -27.80)
>DroSec_CAF1 747 101 - 1
GGACGUGAUGCCGGGAAAGUCGGUGAACAUGGUGUCACCCGAAAUGUACUCGGCGGUAGCGUCUGCAAAG-UA----------UUU--CGAUAUCGGGUGAGUCACAAAAAUGU
....((((((((((.....)))))..........((((((((.(((((((..((((......))))..))-))----------)..--..)).)))))))))))))........ ( -33.60)
>DroSim_CAF1 764 101 - 1
GGACGUGAUGCCGGGAAAGUCGGUGAACAUGGUGUCACCCGAAAUGUACUCGGCGGUAGCGUCUGCAAAG-UA----------UUU--CGAUAUCGGGUGAGUCACAAAAAUGU
....((((((((((.....)))))..........((((((((.(((((((..((((......))))..))-))----------)..--..)).)))))))))))))........ ( -33.60)
>DroEre_CAF1 777 107 - 1
GGACGUGAUGCCGGGGAAGUCGGUGAACAUGGUGUCGCCCGAAAUGUACUCAGCGGUAGCGUCUGCAAAA-UACAAA--CAU--AU--UGAUUUUGGGUGAGUCAGAUAAAUGU
.(((((...(((((.....)))))..))......(((((((((((.......((((......))))....-..(((.--...--.)--)))))))))))))))).......... ( -28.80)
>DroYak_CAF1 794 96 - 1
GGACGUGAUGCCGGGGAAGUCGGUGAACAUGGUGUCGCCCGAAAUGUACUCAGCGGUAGCGUCUGCAAGA-UACAAGUACAUAUUU--UGAUUUCAAGU---------------
((((((..(((.(((....(((((((........))).))))......))).)))...)))))).(((((-((........)))))--)).........--------------- ( -24.70)
>DroMoj_CAF1 500 100 - 1
GGAAGUGAUGCCAGGGAAGUCAGUAAAUAUGGAGUCGCCGGAAAUGUACUCGGCAGUGGCAUCUGGAAUUGAACAA----UU-GUUAUUAACACUGUGGGAGGGG---------
...((((((((((..((..(((.......)))..))(((((........)))))..)))))))........(((..----..-)))......)))..........--------- ( -22.20)
>consensus
GGACGUGAUGCCGGGAAAGUCGGUGAACAUGGUGUCACCCGAAAUGUACUCGGCGGUAGCGUCUGCAAAG_UA__________UUU__CGAUAUCGGGUGAGUCA_AAAAAUGU
((((((..(((((((....(((((((........))).))))......)))))))...)))))).................................................. (-21.77 = -22.38 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:02 2006