Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,777,414 – 9,777,505 |
Length | 91 |
Max. P | 0.869953 |
Location | 9,777,414 – 9,777,505 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -13.39 |
Energy contribution | -13.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.88 |
Structure conservation index | 0.68 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9777414 91 - 27905053 AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGUGCAGAAUGA---------------------AUAAGUUUU ....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -21.20) >DroSec_CAF1 100629 91 - 1 AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGCGCAGAAUGA---------------------AUAAGUUUU ....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -23.10) >DroSim_CAF1 101197 91 - 1 AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGCGCAGAAUGA---------------------AUAAGUUUU ....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -23.10) >DroEre_CAF1 104821 85 - 1 AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCA----CAGAGGCGCAGAAUAA---------------------AUAAGC--U .......(((((((....((((.....)))).(((....(((......))-----).......))).----.....)))))))....---------------------......--. ( -16.20) >DroYak_CAF1 104264 106 - 1 AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCA----CAGAGGCGCAGAAUAACUAAUAUAUGUACAUAUGUACAUAAGC--U .(((...(((((((....((((.....)))).(((....(((......))-----).......))).----.....)))))))..........(((((((....))))))).))--) ( -24.90) >DroAna_CAF1 98384 83 - 1 AAGCCAAUUUGCGCAUAAUACGCUGAACGUGAGCAAAAACCUAAAACAGAAUUCAACUGCACACACA---ACACACUCGCAGAAUA------------------------------- .......(((((((.......)).....(((.(((......................))).)))...---........)))))...------------------------------- ( -10.45) >consensus AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA_____ACUGCACACGCA___GCAAAGGCGCAGAAUAA_____________________AUAAGU__U .......(((((((........(((..(....).............(((.......)))....)))..........))))))).................................. (-13.39 = -13.30 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006