Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,775,547 – 9,775,637 |
Length | 90 |
Max. P | 0.524889 |
Location | 9,775,547 – 9,775,637 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 82.48 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -21.19 |
Energy contribution | -21.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.20 |
Mean z-score | -1.92 |
Structure conservation index | 0.61 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9775547 90 + 27905053 ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGGUGGUGACCUGACCAUGCUGAUGGUGCAGCAUUUAAUGCG .(((((((((((.......)))))))))))(((((.((.(((((((.(.((.(....))).).)).))).)).))))))).......... ( -35.80) >DroSec_CAF1 98746 87 + 1 ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG---UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG .(((((((((((.......)))))))))))(((((.((.(((((..(((((---(.....))))))))).)).))))))).......... ( -38.80) >DroSim_CAF1 99339 87 + 1 ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG---UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG .(((((((((((.......)))))))))))(((((.((.(((((..(((((---(.....))))))))).)).))))))).......... ( -38.80) >DroEre_CAF1 102346 80 + 1 ACACCACUGGGGAGACUCAUCCCUGGGGUGGCUGCCUUGAU-------GGG---UGAGCUCCCCAUGCUGAUGGUGCAGCAUUUAAUGCG .(((((((((((((.(((((((..(((((....)))))...-------)))---)))))))))))....).)))))..((((...)))). ( -36.60) >DroYak_CAF1 101955 80 + 1 ACACCACUGGGGAGACUCAUCCCUGGGGUGGCUGCCUUGAU-------GGG---UGAGCUCCCUAUGCUGAUGGUGCAGCAUUUAAUGCG .(((((((((((((.(((((((..(((((....)))))...-------)))---)))))))))))....).)))))..((((...)))). ( -34.30) >DroAna_CAF1 96250 75 + 1 CUGCCCCUGGGGAGACUCAUCCUGGUGGUGGCCGGCAUGUUGGAUUUUGG---------------UGCUGAUGGUGCAGCAUUUAAUGCG (.((((((.((((......)))).).)).))).)((((..........((---------------(((((......)))))))..)))). ( -23.10) >consensus ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG___UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG .((((.((.((((......)))).))))))((................((............))((((((......)))))).....)). (-21.19 = -21.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:58 2006