Locus 3621

Sequence ID 3R_DroMel_CAF1
Location 9,775,058 – 9,775,155
Length 97
Max. P 0.517443
window5830

overview

Window 0

Location 9,775,058 – 9,775,155
Length 97
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -30.80
Consensus MFE -21.17
Energy contribution -22.48
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -1.05
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.517443
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9775058 97 + 27905053
CCUA------------CUGAUUUUCCUUAGUGCACCUCCCGCUUCGGAUGCAGCUCCUGGCGUUUCGCUCUGCCAGCUGGUGCAAUCUGUUGGAGCGGCGCAA-AUGCAU
....------------.............((((..((((.....((((((((.(..((((((........))))))..).))).)))))..))))..))))..-...... ( -33.10)
>DroSec_CAF1 98230 97 + 1
CCUA------------CUGAUUUUCCUUAGUGCACCUCCCGCUUCGGAUGCAGCUCCUAGCGUUUCGCUCUGCCAGCUGGUGCAAUCUGUUGGAGCGGCGCAA-AUGCAU
....------------(((....(((..((((.......))))..)))..)))......((((((((((((.(((((.(((...))).))))))).)))).))-)))).. ( -28.10)
>DroSim_CAF1 98844 97 + 1
CCUU------------CUGAUUUUCCUUAGUGCACCUCCCGCUUCGGAUGCAGCUCCUGGCGUUUCGCUCUGCCAGCUGGUGCAAUCUGUUGGAGCGGCGCAA-AUGCAU
....------------.............((((..((((.....((((((((.(..((((((........))))))..).))).)))))..))))..))))..-...... ( -33.10)
>DroEre_CAF1 101843 104 + 1
UCUACCCC----A-CCCUCAUUUCCCUCAGUGCACAUCCAGCUUCGGAUGCAGCUCCUGGCGUUUCGCUCGGCCAGCUGGUGCAAUCUGUUGGAGCAGCGAAA-AGGCAU
........----.-.......((((..((((((((((((......)))).(((((((.((((...)))).))..))))))))))..)))..))))..((....-..)).. ( -31.30)
>DroYak_CAF1 101470 109 + 1
UCUAUAAUCUGGAGACUAUGUUUCCCUCAGUGCACUUCCAGCUUGGGAUGCAGCUCCUGGCGUUUCGCUCUGCCAGCUGGUGCAAUCUGUUGGAGCAGCGUAA-AGGCAU
..........((((....(((.((((.....((.......))..)))).))).))))..((.(((((((((.(((((.(((...))).))))))).)))).))-).)).. ( -34.30)
>DroAna_CAF1 95771 100 + 1
CAUU--------U-CUCCAGUUUUGUCCAGUACAUUUCCAACCUGAGAUCCAGAUCCUUGCGU-UCGCUUUGGCAGCUGCUACAAUCUGCUGGAGGAUUGCAAAAAGAAU
((.(--------(-(((((((.((((.((((...........(((.....)))..((..((..-..))...))..))))..))))...))))))))).)).......... ( -24.90)
>consensus
CCUA____________CUGAUUUUCCUCAGUGCACCUCCAGCUUCGGAUGCAGCUCCUGGCGUUUCGCUCUGCCAGCUGGUGCAAUCUGUUGGAGCAGCGCAA_AUGCAU
.............................((((..((((.....((((((((.(..((((((........))))))..).))).)))))..))))..))))......... (-21.17 = -22.48 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:57 2006