| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,768,765 – 9,768,876 |
| Length | 111 |
| Max. P | 0.876560 |
| Location | 9,768,765 – 9,768,876 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.52 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -19.99 |
| Energy contribution | -19.52 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9768765 111 + 27905053 CAGGGCAAAACUAUCUCAUGGAUAUCGCCAUCGAUAAACUCGAAGAUAUCCUCCUUCUCAGUGCCGAUAAAAGCCUUGCUAACAAAUUCAGCACUUUCCCUAUUGCCCAGG ..((((((...........(((((((....((((.....)))).)))))))........(((((.((....(((...))).......)).))))).......))))))... ( -29.40) >DroSec_CAF1 92004 111 + 1 CAGGGCAGAACUAUCUCAUGGAUAUCGCCCUCGAUAAACUCGAAGAUAUCCUCCUUCUCAGUGCCGAUAAAAGCCUUGCUAACAAAUUCAGCACUUUCCCUAUUGCCCAGG ..((((((...........(((((((....((((.....)))).)))))))........(((((.((....(((...))).......)).))))).......))))))... ( -29.10) >DroSim_CAF1 92702 111 + 1 CAGGGCAGAACUAUCUCAUGGAUAUCGCCCUCGAUAAACUCGAAGAUAUCCUCCUUCUCAGUGCCGAUAAAAGCCUUGCUAACAAAUUCAGCACUUUCCCUAUUGCCCAGU ..((((((...........(((((((....((((.....)))).)))))))........(((((.((....(((...))).......)).))))).......))))))... ( -29.10) >DroEre_CAF1 95385 111 + 1 CUGGGCAGGACUAUCUCGUGGAUAUCACCCUCGACAAACUCGAAGAUAUCCUCCUUCUCAGUGUUGCUAAAAGCUUUCCUAACAAACUCAGCACUUUCCAUAUUGCCCAGG ((((((((((.......(.(((((((....((((.....)))).))))))).)......(((((((......................))))))).)))....))))))). ( -30.25) >DroWil_CAF1 78461 111 + 1 UAUGGCAGACGUAUCUGCUCUAUGGAGCCAUUGAUCGAUUCGAAUAUGUCCUCCUUCUCACUGCCACUCAAUGCCUUUUCAACGAAAUCCGCACUUUCCAUAUUACCAGUA ..((((((((((((..((((....))))..((((.....)))))))))))...........))))).....(((..((((...))))...))).................. ( -18.90) >DroYak_CAF1 95035 111 + 1 CAGGGCAGGACUAUCUCGUGGAUAUCACCCUCGACAAACUCGAAGAUAUCCUCCUUCUCGUUGUUACUAAAAGCAUUCUUCACAAAUUCCGCACUUUCCAUAUUGCCCAGC ..((((((((.......(.(((((((....((((.....)))).))))))).)........((((......)))).....................)))....)))))... ( -22.60) >consensus CAGGGCAGAACUAUCUCAUGGAUAUCGCCCUCGAUAAACUCGAAGAUAUCCUCCUUCUCAGUGCCGAUAAAAGCCUUGCUAACAAAUUCAGCACUUUCCAUAUUGCCCAGG ..((((((...........(((((((....((((.....)))).)))))))........(((((..........................))))).......))))))... (-19.99 = -19.52 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006