Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,766,086 – 9,766,226 |
Length | 140 |
Max. P | 0.807727 |
Location | 9,766,086 – 9,766,187 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -16.80 |
Energy contribution | -17.64 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.72 |
Structure conservation index | 0.74 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9766086 101 - 27905053 GGCAGUGGUAGCCGGGCCAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGAACAAAAAAAAAAAAAAACAACAAGAG-GGGGAAAAUGGUUGUUGGUAAAU (((.......)))..(((..(((((.(((......))))))))..((((....))))..........((((((.....-..........))))))))).... ( -23.36) >DroSec_CAF1 89341 95 - 1 GGCAGUGGUAGCUGGGCCAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGAACAAAAA-----AAAAACAACAAGAG-G-GGAAAAUGAUUGUUGGUAAAU .((.(((((......(((((....)))))......))))).))..((((....))))..-----.....((((((..(-.-......)..))))))...... ( -23.50) >DroSim_CAF1 89765 96 - 1 GGCAGUGGUAGCCGGGCCAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGAACAAAAAA----AAAAACAACAAGAG-G-GGAAAAUGGUUGUUGGUAAAU (((.......)))..(((..(((((.(((......))))))))..((((....))))...----...((((((.....-.-........))))))))).... ( -23.44) >DroEre_CAF1 92792 90 - 1 GGCAGUGGUAGCCGGGCAAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGCG--AAAA-----AAAAA---CAGAGG-G-GGAAAAUGGUUGUCGGUAAAU (((.......))).(((((.(((((.(((......))))))))..((((....--....-----.....---))))..-.-.........)))))....... ( -19.02) >DroYak_CAF1 92382 91 - 1 GGCAGUGGUAGCCGGGCCAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGCG--AACA-----AAAAA---CGAAGGGG-GGAAAAUGGUUGUUGGUAAAU ...(.(..(((((((.(((((((..((((......))))....))))))).).--....-----.....---(....)..-......))))))..).).... ( -23.60) >consensus GGCAGUGGUAGCCGGGCCAAGUCAUUGGCAAUCGAGCCAUGGCGAUUUGGGAACAAAAA_____AAAAACAACAAGAG_G_GGAAAAUGGUUGUUGGUAAAU (((..((((......)))).)))((..(((((((.((....))..((((....))))..............................)))))))..)).... (-16.80 = -17.64 + 0.84)
Location | 9,766,125 – 9,766,226 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -23.37 |
Energy contribution | -23.77 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.27 |
Mean z-score | -3.42 |
Structure conservation index | 0.69 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9766125 101 - 27905053 AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG-GCUGGCAGUGGUAGCCGGGCCAAGUCAUUGGCAA--UCGAGCCAUGGCGAUUUGGGAACAAAAAAAA ....((((((....(((((..(((.....)))..))-)))(((.......))).))))))(((((.(((..--....))))))))..((((....))))..... ( -36.50) >DroSec_CAF1 89377 98 - 1 AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG-GCUGGCAGUGGUAGCUGGGCCAAGUCAUUGGCAA--UCGAGCCAUGGCGAUUUGGGAACAAAAA--- ....((((((....(((((..(((.....)))..))-)))..((((....))))))))))(((((.(((..--....))))))))..((((....))))..--- ( -35.90) >DroSim_CAF1 89801 99 - 1 AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG-GCUGGCAGUGGUAGCCGGGCCAAGUCAUUGGCAA--UCGAGCCAUGGCGAUUUGGGAACAAAAAA-- ....((((((....(((((..(((.....)))..))-)))(((.......))).))))))(((((.(((..--....))))))))..((((....))))...-- ( -36.50) >DroEre_CAF1 92825 96 - 1 AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG-GCUGGCAGUGGUAGCCGGGCAAAGUCAUUGGCAA--UCGAGCCAUGGCGAUUUGGGCG--AAAA--- ....(((.(((....((((.(((...((((.(((((-(((.((..(((...))).))..))))))))..))--))..))).))))....))).))--)...--- ( -33.00) >DroYak_CAF1 92416 96 - 1 AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG-GCUGGCAGUGGUAGCCGGGCCAAGUCAUUGGCAA--UCGAGCCAUGGCGAUUUGGGCG--AACA--- ....(((.(((....((((.(((...((((.(((((-((((((..(((...))).))).))))))))..))--))..))).))))....))).))--)...--- ( -37.10) >DroMoj_CAF1 85564 86 - 1 AUUAUUGGCAAUAAAGCCAAGGUGUGGAUUAUAGUUGGCUGGUAGCUU-AGCCAGU--UGGCCACUGCGAAUAUCGAGUGAUGGAGAUG--------------- ....(((((......))))).............((..((((((.....-.))))))--..))((((.((.....)))))).........--------------- ( -25.70) >consensus AUUAUUGGCCAUAAAGCCAAGGUGUGGAUUAUAGUG_GCUGGCAGUGGUAGCCGGGCCAAGUCAUUGGCAA__UCGAGCCAUGGCGAUUUGGGAA__AAAA___ ........(((....((((.((..(((...........(((((.......)))))(((((....)))))....)))..)).))))....)))............ (-23.37 = -23.77 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:54 2006