Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,762,822 – 9,762,920 |
Length | 98 |
Max. P | 0.812362 |
Location | 9,762,822 – 9,762,920 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.71 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -26.16 |
Energy contribution | -26.55 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.08 |
Mean z-score | -2.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9762822 98 - 27905053 CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG ((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90) >DroSec_CAF1 86173 98 - 1 CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG ((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90) >DroSim_CAF1 86533 98 - 1 CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG ((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90) >DroEre_CAF1 89554 98 - 1 CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGGGAGCACACGAGCCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG ((((....((((......)))).......(((.(((((..(((...(((((((((.....)))))))))..)))))))).)))...........)))) ( -29.70) >DroYak_CAF1 89162 98 - 1 CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGCCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAAGUUGG ((((((.....(((..((((((((.(.((((.....)))).)....(((((((((.....)))))))))..))).)))))))).........)))))) ( -35.74) >DroAna_CAF1 84134 94 - 1 CCAGCUACUCGCCAAUUACCGACACGAUCGCAAAUUGCCAGCACACGAGGCUGGUAAUUUGUUGGGCUUAAUGUCCGGUAUGCAAAUAUAUAAC---- ..........((....((((.........(((((((((((((.......))))))))))))).((((.....)))))))).))...........---- ( -29.90) >consensus CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG ...(((((((((......)))).......(((((((((.(((.......))).)))))))))(((((.....)))))))).))............... (-26.16 = -26.55 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:52 2006