Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,761,257 – 9,761,349 |
Length | 92 |
Max. P | 0.570301 |
Location | 9,761,257 – 9,761,349 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.37 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -15.85 |
Energy contribution | -16.18 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.72 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9761257 92 - 27905053 ACGAGAGCUGUGCGGCGCAG----AGAAAAUGUUGCUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA ..(((.((.((..(((.(((----..(.....)..))))))..)).)))))((((((((((((..(((....)))..))))))))))))....... ( -26.70) >DroPse_CAF1 83218 94 - 1 ACGCGAACGCA--GACGCAGACGCAGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA ..(((...((.--...))...))).............(((......)))..((((((((((((..(((....)))..))))))))))))....... ( -21.80) >DroEre_CAF1 88252 92 - 1 ACGAGAGCUGUGCGGCGCAG----AGAAAAUGUUGCUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA ..(((.((.((..(((.(((----..(.....)..))))))..)).)))))((((((((((((..(((....)))..))))))))))))....... ( -26.70) >DroWil_CAF1 72554 73 - 1 ACGAAAUC-----------------------UUUUUCAACCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA ..((((..-----------------------..))))..........((..((((((((((((..(((....)))..))))))))))))....)). ( -15.60) >DroAna_CAF1 82849 86 - 1 ACGUG----GAGCG--GAAA----AAAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA .((((----.....--....----.............(((......)))..((((((((((((..(((....)))..)))))))))))).)))).. ( -20.10) >DroPer_CAF1 83434 94 - 1 ACGCGAACGCA--GACGCAGACGCAGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA ..(((...((.--...))...))).............(((......)))..((((((((((((..(((....)))..))))))))))))....... ( -21.80) >consensus ACGAGAAC_GA__G_CGCAG____AGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA .((..................................(((......)))..((((((((((((..(((....)))..))))))))))))...)).. (-15.85 = -16.18 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006