Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,760,957 – 9,761,077 |
Length | 120 |
Max. P | 0.607444 |
Location | 9,760,957 – 9,761,077 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.14 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -29.02 |
Energy contribution | -28.98 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.18 |
Structure conservation index | 0.92 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9760957 120 + 27905053 ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACCAGCGAAC ....(((((((..(((.(((((((.....(((....)))................(((((......(((......)))...)))))))).))))..))).))))).((......)))).. ( -34.10) >DroSec_CAF1 84326 113 + 1 ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC------- .((...(((((..(((.(((((((.....(((....)))................(((((......(((......)))...)))))))).))))..))).)))))..))....------- ( -32.40) >DroSim_CAF1 84709 113 + 1 ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAAGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC------- .((((((..((((((....((((((....))))))..))))))....))))))..(((((......(((......)))...))))).............(((....)))....------- ( -32.10) >DroEre_CAF1 87995 106 + 1 ACGAUCGGUGUUUGUGUUGAGUGGUCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACUGCACCACCUCACCCACUGCACCA-------------- ......(((((..(((.((((((((...........(((((..((.......)))))))((.....(((......))).....)))))).))))..))).))))).-------------- ( -30.10) >DroYak_CAF1 87545 106 + 1 ACGAUCGGUGUUUGUGUUGAGUGGUCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACAGCACCACUGCAACGCCUUACCCACUGCACCA-------------- ......(((((..((((((((((((.((........(((((..((.......)))))))((......))......)))))))).))))))..........))))).-------------- ( -29.40) >consensus ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC_______ ......(((((..(((..(((((((.((((((....)))....((...))..))).)))))))...(((......)))..................))).)))))............... (-29.02 = -28.98 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:50 2006