Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,758,946 – 9,759,038 |
Length | 92 |
Max. P | 0.950128 |
Location | 9,758,946 – 9,759,038 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -15.30 |
Consensus MFE | -9.90 |
Energy contribution | -10.22 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.34 |
Structure conservation index | 0.65 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9758946 92 + 27905053 UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGUAUUAUAUAUAUAC--AUAUAUAUUGUAUACUGCAUAUUGCUUCCCUCCACCGAUUCC (((.....(((..((((.......(((((((((......(((((((....--))))))).)))))))))....))))..))).....))).... ( -18.00) >DroSec_CAF1 82288 82 + 1 UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUAAA------C--AUAUAUAU----UACUGCAUAUAGCUUCCCUCCACCGAUUCC .....(((((((((((...(((....)))..))))))......------.--........----....((.....)).........)))))... ( -13.60) >DroSim_CAF1 82208 81 + 1 UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUA-A------U--AUAUAUAU----UACUGCAUAUAGCUUCCCUCCACCGAUUCC .....(((((((((..........)))).(((((.(((.((-(------(--(....)))----)).))))))))...........)))))... ( -14.90) >DroEre_CAF1 85834 80 + 1 UCGUCAUCGGGCUGUAAAUUACCACAGUAU--AUAGCAUUAAAU--------AUGUACAU----AUAUACGUAUAGCUGCCCUCCACCGAUUCA .....((((((((((........)))))..--...(((....((--------(((((...----...)))))))...)))......)))))... ( -16.30) >DroYak_CAF1 85431 88 + 1 UCGUCAUCGGGCUGUAAAUUACCCCAGUAU--AUAGCAUUAUAUGGAUAUAUAUAUACCU----ACAUACAUGAAUCUCCCCUUCACCGAUUCC .....(((((((((((.(((.....))).)--)))))..((((((......))))))...----......................)))))... ( -13.70) >consensus UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUAAAU_____C__AUAUAUAU____UACUGCAUAUAGCUUCCCUCCACCGAUUCC .....(((((((((((...(((....)))..))))))................(((((............)))))...........)))))... ( -9.90 = -10.22 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:49 2006