| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,754,748 – 9,754,850 |
| Length | 102 |
| Max. P | 0.800394 |
| Location | 9,754,748 – 9,754,850 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.00 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.800394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9754748 102 - 27905053 UGGCCGCCAUAUCGGGCAAUUAUUUUCAAAUUGUCUCGUUAGUU-UCGAGGCAGC---GCCGCAAUUACUAUUGCCCGCAAGAUAUACACGCAGUAUCGGUCGGCU--------- .(((((((....((((((((...........(((((((......-.)))))))((---...)).......))))))))...(((((.......))))))).)))))--------- ( -34.80) >DroPse_CAF1 76575 106 - 1 UGGCCGCCAUAUAAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUUUUCGAGGCAGCUCGGCAGCAAUUACAAUUGCCCGCAAGAUAUGUAC--AGUAUAUGG---AUGUAC----A .(..(((((((((.(((((((..........(((((((........)))))))(((....)))......)))))))(....)........--..)))))))---.))..)----. ( -29.60) >DroSec_CAF1 78192 86 - 1 UGGCCGCCAUAUCAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUU-UCGAGGCAGC---GCCGCAAUUACUAUUGCCCGCAAGAUAUAUA----------------U--------- .(((.(((......))).............((((((((......-.)))))))).---)))(((((....))))).(....).......----------------.--------- ( -24.00) >DroEre_CAF1 81576 107 - 1 UGGCCGCCAUAUCAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUU-UCGAGGCAGC---GCGGCAAUUACUAUUGCCCGCAAGAUAUACACGCAGUAUCGGUCGGCUAUAC----A ((((((((((((...((..............(((((((......-.)))))))((---(.((((((....)))))))))...........)).)))).)).))))))...----. ( -38.10) >DroAna_CAF1 76416 111 - 1 UGGCCGCCAUAUCAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUU-UCGAGGCAGA---ACCGCAAUUACAAUUGCCCGCAAGAUAUACACGCAGUAUCUGGUGGGUAAAUAUGAG ..((.(((......))).............((((((((......-.)))))))).---...))........((((((((.((((((.......)))))).))))))))....... ( -33.50) >DroPer_CAF1 76819 102 - 1 UGGCCGCCAUAUAAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUUUUCGAGGCAGCUCGGCAGCAAUUACAAUUGCCCGCAAGAUAUGUAC--AGUAUAUGG---AUG-------- ......(((((((.(((((((..........(((((((........)))))))(((....)))......)))))))(....)........--..)))))))---...-------- ( -28.30) >consensus UGGCCGCCAUAUCAGGCAAUUAUUUUCAAAUUGUCUCGUUAGUU_UCGAGGCAGC___GCCGCAAUUACAAUUGCCCGCAAGAUAUACAC__AGUAUCUGG___AU_________ .....(((......)))...(((((((...((((((((........)))))))).......(((((....)))))..).)))))).............................. (-19.60 = -19.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:48 2006