Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,748,055 – 9,748,165 |
Length | 110 |
Max. P | 0.573225 |
Location | 9,748,055 – 9,748,165 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.24 |
Mean single sequence MFE | -38.80 |
Consensus MFE | -31.76 |
Energy contribution | -31.60 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.80 |
Structure conservation index | 0.82 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9748055 110 + 27905053 UUGUCCCUGCAGCCCGGAGACCAGAGACCAUUGUGCGCAA---G---ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGAGCCAGAUACUCGGGGC ...........((((.(((..........((((((((((.---.---......(((.....)))(((((((....)))))))))))))))))..(((((...))))).))).)))) ( -38.90) >DroPse_CAF1 69980 114 + 1 UUGUCCCAGCCAUCCCAAGACCCCCGACCACUGUGCGAGACGAGGCUUCGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGAAGCUGAUGCUGGAU-- .....(((((.(((...((..........((((((((....(.(((....)))).........((((((((....)))))))).))))))))..........))))))))))..-- ( -40.65) >DroSec_CAF1 71487 103 + 1 UUGUCCCUGCAGCCCGGCG-------ACCAUUGUGCGCAA---G---ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGUGCCAGAUACUCGGGGC ..(((((.(((((...(((-------((..(((((((((.---.---...............)))))))))...))))))).)))((((((.....)))))).........))))) ( -36.53) >DroSim_CAF1 71427 103 + 1 UUGUCCCUGCAGCCCGGAG-------ACCAUUGUGCGCAA---G---ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGAGCCAGAUACUCGGGGC ...........((((.(((-------...((((((((((.---.---......(((.....)))(((((((....)))))))))))))))))..(((((...))))).))).)))) ( -38.90) >DroEre_CAF1 74646 103 + 1 UUGUCCCUGCAGCCCGGAG-------ACCAUUGUGCGCAA---G---ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGAGGCAGAUACCCGGGGC ..(((((....(((((((.-------...((((((((((.---.---......(((.....)))(((((((....)))))))))))))))))...)))).))).(.....)))))) ( -39.70) >DroYak_CAF1 74342 102 + 1 UUGUCCCUGCAGCCCGGAG-------ACCAUUGUGCGCAA---G---ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUG-GACAGAUACUCGGGGC ...........((((.(((-------...((((((((((.---.---......(((.....)))(((((((....)))))))))))))))))..((((.-...)))).))).)))) ( -38.10) >consensus UUGUCCCUGCAGCCCGGAG_______ACCAUUGUGCGCAA___G___ACGGCCCAUUUAAAAUGUGCGCAAAUAGUUGCGCAUGCGCGCAGUUAAUCUGAGCCAGAUACUCGGGGC ............(((((............((((((((((..............(((.....)))(((((((....)))))))))))))))))..(((((...)))))..))))).. (-31.76 = -31.60 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006