Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,746,899 – 9,746,992 |
Length | 93 |
Max. P | 0.679360 |
Location | 9,746,899 – 9,746,992 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -20.07 |
Energy contribution | -20.47 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9746899 93 - 27905053 CAUUCACAUCCACAUC------------CACAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUC ((((..((((..((((------------.....((((((.....)))))).))))..------------))))..))))(((((.((.((.(((......))))).))))))).... ( -31.00) >DroSec_CAF1 70318 84 - 1 CA------UCCACAUC------------CACAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCU--- ..------((((..((------------((...((((((.....))))))...))))------------..))))...((((((.((.((.(((......))))).))))))))--- ( -29.70) >DroSim_CAF1 70268 81 - 1 CA------UCCA------------------CAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCUGUU ((------((..------------------(((((((((.....))))))..)))..------------))))..(((((((((.((.((.(((......))))).))))))))))) ( -27.10) >DroEre_CAF1 73061 99 - 1 CA------UCCACAUC------------CACAUCCAUUGGGCCACAAUGGCGAUGGAGAUGGAGAUGGAGAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU ..------((((..((------------((..((((((..(((.....)))))))))..))))..))))..........(((((.((.((.(((......))))).))))))).... ( -34.50) >DroYak_CAF1 72767 99 - 1 CA------UCCACAUCCACAACCGCAUCCACAUCCAUUGGGCCACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU ..------..................((((..((((((..(((.....)))))))))------------..))))....(((((.((.((.(((......))))).))))))).... ( -28.00) >consensus CA______UCCACAUC____________CACAUCCAUUGGGCGACAAUGGCGAUGGA____________GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU ........((((..((..............(((((((((.....))))))..)))..............))))))....(((((.((.((.(((......))))).))))))).... (-20.07 = -20.47 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:46 2006