Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,742,518 – 9,742,612 |
Length | 94 |
Max. P | 0.832840 |
Location | 9,742,518 – 9,742,612 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -18.06 |
Energy contribution | -18.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.85 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9742518 94 - 27905053 AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUAAGGGCUUAAUAAAUCUAUAAAAUUGCAAAGCACAUUUAUGGUAA ......(((..((((((((.............)).))))))..)))..................(((((((..(((...)))..)))))))... ( -19.52) >DroSec_CAF1 66216 94 - 1 AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAACCUAUAAAAUUGCAAAACAAAAUUAUGGUAA ......(((..((((((((.............)).))))))..)))((....))........(((.((((..(((.....)))..))))))).. ( -18.42) >DroSim_CAF1 65991 94 - 1 AAAAAUGCAGACCAUCUCGGUGGCACUCAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAACCUAUAAAAUUCCAAAACAAAAUUAUGGUAA ......(((..((((((((.............)).))))))..)))((....))........(((.((((...............))))))).. ( -16.08) >DroEre_CAF1 68691 94 - 1 AAAAAUGCAGACUACCUCGGGAGCACCAAUAACGAAGGUGGGAUGCUCUUCGGGACUAGUAAAUCUAUAAAAUUGUAAAACAAAUUUAUGGCAC .....(((..(((((((..((((((((....((....)).)).))))))..)))..)))).....((((((.(((.....))).))))))))). ( -26.10) >DroYak_CAF1 68361 94 - 1 AAAAAUGCAGACUUCCUCGGGAGCAGCCAGAACGAAGGUGGGAUGCUCUUUGGGCUUAAUAAAUCCAUAAACGUGCAAAACAAAUUUAUGGCAG .....(((......(((..((((((.((...((....)).)).))))))..)))...........((((((..((.....))..))))))))). ( -26.40) >consensus AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAAUCUAUAAAAUUGCAAAACAAAUUUAUGGUAA ......(((..((((((((.............)).))))))..)))..................(((((((.(((.....))).)))))))... (-18.06 = -18.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:45 2006