Locus 3608

Sequence ID 3R_DroMel_CAF1
Location 9,738,070 – 9,738,169
Length 99
Max. P 0.938129
window5816

overview

Window 6

Location 9,738,070 – 9,738,169
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 88.60
Mean single sequence MFE -23.62
Consensus MFE -22.24
Energy contribution -21.60
Covariance contribution -0.64
Combinations/Pair 1.32
Mean z-score -1.59
Structure conservation index 0.94
SVM decision value 1.29
SVM RNA-class probability 0.938129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9738070 99 + 27905053
CUCACCUCUCACCCACCUGGAAAUAUUUCUGACC-CCAAGCCCCUGCUCCGCUUUGCCCCUCUGCCUCAUGUGGCAACAUGCGGCGCUUGGAUAGACAAA
............((....)).......((((...-((((((....((........))......(((.(((((....))))).))))))))).)))).... ( -23.80)
>DroSec_CAF1 61728 93 + 1
CUCACCUCUCA----CCUGGAAAUAU--CUGACC-CCAAGCCCCGGUACCUCUUUGCCUCUCUGCCUCAUGUGGCAACAUGCGGCGCUUGGAUAGACAAA
....((.....----...)).....(--(((...-((((((...((((......)))).....(((.(((((....))))).))))))))).)))).... ( -26.80)
>DroSim_CAF1 61547 96 + 1
CUCACCUCUCA----CCUGGAAAUAUUUCUGACCCCCAGGCCCCGGCCCCUCUUUGCCACUCUGCCUCAUGUGGCAGCAUGCGGCGCUUGGAUAGACAAA
....((.....----...)).......((((....((((((.(((((........)))...(((((......))))).....)).)))))).)))).... ( -26.60)
>DroEre_CAF1 64008 95 + 1
CUCACCUCUCA----CCUGGAAAUAUUUCUGACCCCCAAUCCCCUGCUUCUCA-CGUAUCUCUGCCUCAUGUGGCAACAUGCGGCGCUUGGAUAGACAAA
....((.....----...))..................((((...((......-.(.....).(((.(((((....))))).)))))..))))....... ( -16.40)
>DroYak_CAF1 63725 95 + 1
CUCACCUCUCA----CCUGGAAAUAUUUCUGACCCCCAAGCCCCCGCUCCUCC-CGCGCCUCUGCCCCAUGUGGCAACAUGCGGCGCUUGGAUAGACAAA
....((.....----...)).......((((....((((((...(((......-.))).....(((.(((((....))))).))))))))).)))).... ( -24.50)
>consensus
CUCACCUCUCA____CCUGGAAAUAUUUCUGACCCCCAAGCCCCGGCUCCUCUUUGCCCCUCUGCCUCAUGUGGCAACAUGCGGCGCUUGGAUAGACAAA
....((............))...............((((((...(((........))).....(((.(((((....))))).)))))))))......... (-22.24 = -21.60 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:43 2006