Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,724,886 – 9,724,987 |
Length | 101 |
Max. P | 0.843123 |
Location | 9,724,886 – 9,724,987 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.07 |
Mean single sequence MFE | -29.65 |
Consensus MFE | -15.95 |
Energy contribution | -17.15 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.54 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9724886 101 + 27905053 ----AAGAAA------------AACGCGUGAAAAUGUGGCCACAAAAUUCGAUGCCGAUCCAUCAUAAUUUCUUGGGUCGCGUGGAUUUACAAGCGCCCAAAUUAUCGGCAGAUCGU ----..((..------------..(((((....)))))(((.........((((......))))........(((((.(((.((......)).))))))))......)))...)).. ( -28.20) >DroPse_CAF1 45401 105 + 1 GCCUGAUUAC------------AACGCGUGAAAAUGCAGCCACAAAAGUUGAUGUCGAUCCAUCAUAAUUUUGUGGGUCGCGUGGAUUUACAAGCGUUCAAAUUAUCAAGAGAUCGU ...((((...------------((((((((((.(((((.((((((((..(((((......)))))...)))))))).).))))...)))))..)))))......))))......... ( -29.20) >DroYak_CAF1 50328 101 + 1 ----ACGGAA------------AACGCGUGAAAAUGUGGCCACAAACGUCGGUGCCGAUCCAUCAUAAUUUCUGGGCUCGCGUGGAUUUACAAGCGCCCAAAUUAUCGGUAGAUCGU ----..((..------------..(((((....)))))(((((....)).))).))((((.(((((((((..(((((..((.((......)).))))))))))))).))).)))).. ( -30.80) >DroMoj_CAF1 36798 95 + 1 ----ACGG---------UGCU-CAAGCGUGAAAAUGCAGCCACAAUAU--------CAUCCAUCAUAAUUUUGUGAACCGCGUGGAUUUACAAGCGUUCAAAUUAUGAGCGGAUCGU ----((((---------((((-...((((....)))))).))).....--------.((((.((((((((...(((((.((.((......)).)))))))))))))))..))))))) ( -26.90) >DroAna_CAF1 45507 113 + 1 ----CCGAAAAUUCUUGAUUACAACGCGUGAAAAUGCAGCCACAAAAGUUGAUGUCGAUCCAUCAUAAUUUCGAGGGUCGCGUGGAUUUACAAGCGUUCAAAUUAUCAAGAGAUCGG ----((((...((((((((...((((((((..........)))..(((((.(((.((((((.((........))))))))))).)))))....)))))......)))))))).)))) ( -33.60) >DroPer_CAF1 45442 105 + 1 GCCUGAUUAC------------AACGCGUGAAAAUGCAGCCACAAAAGUUGAUGUCGAUCCAUCAUAAUUUUGUGGGUCGCGUGGAUUUACAAGCGUUCAAAUUAUCAAGAGAUCGU ...((((...------------((((((((((.(((((.((((((((..(((((......)))))...)))))))).).))))...)))))..)))))......))))......... ( -29.20) >consensus ____AAGAAA____________AACGCGUGAAAAUGCAGCCACAAAAGUUGAUGUCGAUCCAUCAUAAUUUCGUGGGUCGCGUGGAUUUACAAGCGUUCAAAUUAUCAAGAGAUCGU .........................((((....))))..................(((((....(((((((...(((.(((.((......)).))))))))))))).....))))). (-15.95 = -17.15 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:37 2006