Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,707,302 – 9,707,396 |
Length | 94 |
Max. P | 0.995459 |
Location | 9,707,302 – 9,707,396 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 93.72 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -22.32 |
Energy contribution | -22.96 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.53 |
Structure conservation index | 0.83 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9707302 94 - 27905053 UGGCGCCAAUGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAAACAAGAGAUACAAUGGCGCCCAGAUACAUUUACAAUUGACUUAAC .(((((((.((..((..((((((((((....))))))))))..)).....(....)...)).)))))))......................... ( -27.00) >DroSec_CAF1 31259 94 - 1 UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAAAGCUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC .(((((((...(((((.((((((((((....))))))))))...(.....)..)))))....)))))))......................... ( -29.70) >DroSim_CAF1 31000 94 - 1 UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAGAGCUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC .(((((((...(((((.((((((((((....))))))))))...(.....)..)))))....)))))))......................... ( -30.10) >DroEre_CAF1 32514 94 - 1 UGGCGCCAAAGAGCUUAAAAGUUUUGGAUACCCGAAGCUGGCCAGGGACACAAGAGAUAGAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC .(((((((..(.(((....((((((((....)))))))))))).(.....)...........)))))))......................... ( -23.70) >DroYak_CAF1 32277 94 - 1 UGGCGCCAAAGAGCUUAAAAGUUUUGGAUACCCGUGGCUGUCCAGAGUUACAAGAGAUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC .(((((((.....(((.....(((((((((.(....).)))))))))......)))......)))))))......................... ( -23.80) >consensus UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAGAGAUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC .(((((((.....((..((((((((((....))))))))))..)).....(....)......)))))))......................... (-22.32 = -22.96 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006