Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,705,700 – 9,705,790 |
Length | 90 |
Max. P | 0.644721 |
Location | 9,705,700 – 9,705,790 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 79.81 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -13.32 |
Energy contribution | -14.52 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.83 |
Structure conservation index | 0.58 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9705700 90 + 27905053 CAGGAUUCACGAUCCUGAUCCCCCGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG (((((((...))))))).......((--(...((((((((.((((.(((..........))).))))..))))))))..))).......... ( -23.50) >DroSec_CAF1 29684 90 + 1 CAGGAUUCACGAUCCUGAUCCCCAGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG (((((((...))))))).....((((--(...((((((((.((((.(((..........))).))))..))))))))..)).)))....... ( -24.20) >DroSim_CAF1 29407 90 + 1 CAGGAUUCACGAUCCUGAUCCCCAGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG (((((((...))))))).....((((--(...((((((((.((((.(((..........))).))))..))))))))..)).)))....... ( -24.20) >DroEre_CAF1 30905 82 + 1 CAGGAUU-------CUGAUCCGC-GC--GAUUAGUUAGUCCUUCUCGCUGACAAUCCAGGGCUAGAAUAGACUAACUUCUGCCUGAUCCUCG (((((((-------(((..((..-(.--((((.((((((.......))))))))))).))..))))))(((......))).))))....... ( -22.10) >DroYak_CAF1 30643 82 + 1 CAGGAUU-------CUGAUCCGC-GC--GAUUAGUUAGUCCUUUUCGCUGGCAAUCCAGGGCUAGAAUAGACUAGCUUCUGCCUGAUCUCCC ..(((..-------..((((.(.-((--(...((((((((..((((.((((....)))).)...)))..))))))))..)))).))))))). ( -24.40) >DroAna_CAF1 27353 81 + 1 CAGGAUUCCAUCUACUGAUCCCCCCCAGGAU--------CUGUUGCAUUGCCAAUCCCGGC-UGCA--AGACUAACUUUUCCCUGAUCCCUG ((((............(((((......))))--------)..(((((..(((......)))-))))--)............))))....... ( -19.90) >consensus CAGGAUUCACGAUCCUGAUCCCC_GC__GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG ((((...........(((((........)))))(((((((..(((.(((..........))).)))...))))))).....))))....... (-13.32 = -14.52 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:25 2006