Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,704,434 – 9,704,552 |
Length | 118 |
Max. P | 0.985476 |
Location | 9,704,434 – 9,704,524 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -33.12 |
Consensus MFE | -26.15 |
Energy contribution | -28.43 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.21 |
Mean z-score | -2.26 |
Structure conservation index | 0.79 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9704434 90 + 27905053 G-CAAAUCCCCGAACUUAAACCAAGGAAAAGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCG .-........(((.(((...((((((.....(((((((....))))))).(((((((((....)))))))))..))))))....))).))) ( -34.80) >DroSec_CAF1 28417 90 + 1 G-CAAAUCCCCGAACUUAAACCAAGGAAAAGCCUAUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCG .-...(((((((........((((((.....))).)))...(((((((.......)))))))..)))((((((......)))))))))).. ( -32.60) >DroSim_CAF1 28154 90 + 1 G-CAAAUCCCCGAACUUAAACCAAGGAAAAGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCG .-........(((.(((...((((((.....(((((((....))))))).(((((((((....)))))))))..))))))....))).))) ( -34.80) >DroEre_CAF1 29609 89 + 1 G-CAAAUCCCCGAACUUAAACCAAGGGAAAGCCUGUGGAAAUCCGCGGGAUCUGGCCAUGGAAAUGGCCGGGCAUCUUG-CCCGAGGAUCG (-(...((((..............))))..))((((((....))))))(((((((((((....))))))((((.....)-)))..))))). ( -39.14) >DroYak_CAF1 29300 90 + 1 G-CAAAUCCCCGAACUUAAACCAAGGAAAAGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGACCGAGGAUCG .-........(((.(((...((((((.....(((((((....))))))).(((((((((....)))))))))..))))))....))).))) ( -34.80) >DroAna_CAF1 26134 88 + 1 GGCAAAUCCCUAAACUUAAACCAUCGGCAAGCCUUUGGAAAUCCACUGGAUCUGGAUGUGGAUCU--UCGGAUCGGUUC-UGCGAGGAUCG ..((.((((...........(((..((....))..)))..((((...))))..)))).))((((.--...))))(((((-.....))))). ( -22.60) >consensus G_CAAAUCCCCGAACUUAAACCAAGGAAAAGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCG ..........(((.(((...((((((.....(((((((....))))))).(((((((((....)))))))))..))))))....))).))) (-26.15 = -28.43 + 2.28)
Location | 9,704,462 – 9,704,552 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -36.64 |
Consensus MFE | -31.25 |
Energy contribution | -32.62 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.15 |
Mean z-score | -3.02 |
Structure conservation index | 0.85 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9704462 90 + 27905053 AGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ..(((((((....)))))))....((((((.((.....((((((......))))))((((..(.....)..)))).....)).)))))). ( -40.80) >DroSec_CAF1 28445 90 + 1 AGCCUAUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ..((..(((....)))..))....((((((.((.....((((((......))))))((((..(.....)..)))).....)).)))))). ( -35.70) >DroSim_CAF1 28182 90 + 1 AGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ..(((((((....)))))))....((((((.((.....((((((......))))))((((..(.....)..)))).....)).)))))). ( -40.80) >DroEre_CAF1 29637 89 + 1 AGCCUGUGGAAAUCCGCGGGAUCUGGCCAUGGAAAUGGCCGGGCAUCUUG-CCCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ...((((((....))))))(((((((((((....))))))((((.....)-)))..)))))(((.((((.............))))))). ( -40.82) >DroYak_CAF1 29328 90 + 1 AGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGACCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ..(((((((....)))))))....((((((.((..(((((.((....)).))))).((((..(.....)..)))).....)).)))))). ( -35.50) >DroAna_CAF1 26163 82 + 1 AGCCUUUGGAAAUCCACUGGAUCUGGAUGUGGAUCU--UCGGAUCGGUUC-UGCGAGGAUCGACGCAUUUAAUCCAAUUAUCGAU----- ......(((....))).(((((.((((((((((((.--...))))(((((-.....)))))..))))))))))))).........----- ( -26.20) >consensus AGCCUGUGGAAAUCCGCGGGAUCUGGCCGUGGAAAUGGUCGGGCAUCUUGGCCCGAGGAUCGGCGCAUUUAAUCCAAUUAUCGAUGGCCA ..(((((((....)))))))....((((((.((.....((((((......))))))((((..(.....)..)))).....)).)))))). (-31.25 = -32.62 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:24 2006