| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,702,362 – 9,702,458 |
| Length | 96 |
| Max. P | 0.970428 |
| Location | 9,702,362 – 9,702,458 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 89.65 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -22.41 |
| Energy contribution | -22.83 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9702362 96 - 27905053 GAUAAUGCAGGCAUUUGCUGCAUUUUAUCUUUUUGUGGGCCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAAAUACGCCCACAAAAU ((((((((((.(....)))))))..)))).((((((((((........(((.(((.((((......)))).))))))........)))))))))). ( -31.29) >DroSec_CAF1 26385 88 - 1 -------CAGGCAUUUGCUGCAUUUUAUCUUUUUGUGGGCCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAAAUACGCCCCCA-AAU -------..((((((((((((((((........((((((((........)))).))))..))))))))))))))))................-... ( -27.00) >DroSim_CAF1 25579 96 - 1 GAUAAUGCAGGCAUUUGCUGCAUUUUAUCUUUUUGUGGGCCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAAAUACGCCCCCAAAAU .........((((((((((((((((........((((((((........)))).))))..)))))))))))))))).................... ( -27.00) >DroEre_CAF1 27475 95 - 1 GAUAAAGCAGGCAUUUGCAGCAUUUUAUCUUUUUGGGG-CCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAAAUACGCCCCCAAAAU ((((((((..((....)).))..))))))((((.((((-(........(((.(((.((((......)))).))))))........))))).)))). ( -24.09) >DroYak_CAF1 27078 96 - 1 GAUAAAGCAGGCAUUUGCUGCAUUUUAUCUUUUUGGGGACCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAACUACGCCCCCAAAAU .........((((((((((((((((..(((....)))((((........)))).......)))))))))))))))).................... ( -28.50) >DroAna_CAF1 24231 92 - 1 GAUACGUUAGGCAUUUGUUGGCUUUUAUCUUUC----GGCCCACCUUCUGGUCGUAUAUCAAGUGCGGUAAAUGCCAAAAACUACGCCCCGAAAAU ....((...(((.....(((((.((((((....----((((........))))((((.....)))))))))).))))).......))).))..... ( -22.50) >consensus GAUAAAGCAGGCAUUUGCUGCAUUUUAUCUUUUUGUGGGCCCUCCUUCUGGUCAUAUAUCAAGUGCGGUAAAUGCCAAAAAAUACGCCCCCAAAAU .........((((((((((((((((............((((........)))).......)))))))))))))))).................... (-22.41 = -22.83 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:22 2006