Locus 3593

Sequence ID 3R_DroMel_CAF1
Location 9,700,189 – 9,700,289
Length 100
Max. P 0.594142
window5791

overview

Window 1

Location 9,700,189 – 9,700,289
Length 100
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 80.93
Mean single sequence MFE -29.40
Consensus MFE -17.50
Energy contribution -17.72
Covariance contribution 0.22
Combinations/Pair 1.15
Mean z-score -1.83
Structure conservation index 0.60
SVM decision value 0.12
SVM RNA-class probability 0.594142
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9700189 100 + 27905053
-----------ACUGAAUAGAAACGGAAACGGAAAA-AGGGUUGUACUGAUCGAAGCUCCCAAUAAAUGGGUUGGUGCUAUGGAAACAUGAUCGCGUACAUCGGUUAAUGGU
-----------(((((.......((....)).....-.....((((((((((..(((..(((((......))))).)))(((....)))))))).))))))))))....... ( -29.10)
>DroSec_CAF1 24228 94 + 1
-----------ACCAUUUAGAAAC------GGAAAA-GGGGUUGUACUGAUCGAAGCUCCCAAUAAAUGGGUUGGUGCUAUGGCAACACGAUCGCGUACAUCGGUUAAUGGU
-----------((((((....(((------.((...-.....(((((((((((.(((..(((((......))))).))).((....)))))))).))))))).))))))))) ( -27.40)
>DroSim_CAF1 23388 94 + 1
-----------ACUAUUUAGAAAC------GGAAAA-GGGGUUGUACUGAUCGAAGCUCCCAAUAAAUGGGUUGGUGCUAUGGCAACACGAUCGCGUACAUCGGUUAAUGGU
-----------((((((....(((------.((...-.....(((((((((((.(((..(((((......))))).))).((....)))))))).))))))).))))))))) ( -25.10)
>DroEre_CAF1 25214 112 + 1
UUUUCGAACAAACUGACCAGAAACGGAAGCGGAAAAUGCGGGUGUACUGAUCGAAGCUCCCAAUAAAUGGGUUGGGGCUAUGGAAACAAGAUCGCGUUCAUCGGUUACUGGU
...............(((((.(((.((.(((.....)))(..(((...((((..(((.((((((......))))))))).((....)).)))))))..).)).))).))))) ( -36.10)
>DroYak_CAF1 24784 110 + 1
UUUUCUAACAAACUGACCAGAAACGGAACCGAAAAA-GGGGGUGUACUGAUCGAAACUCCCAAUAAAUGGGUUGGGGCUAUGGA-ACACGAUCGCGUUUAACGGUUACUGGU
...............(((((......(((((.....-((((((............))))))..((((((((((((..(....).-.).))))).)))))).))))).))))) ( -29.30)
>consensus
___________ACUGACUAGAAACGGAA_CGGAAAA_GGGGUUGUACUGAUCGAAGCUCCCAAUAAAUGGGUUGGUGCUAUGGAAACACGAUCGCGUACAUCGGUUAAUGGU
...........((((........((....)).........(.(((((((((((.(((.((((.....)))).....))).((....)))))))).))))).)......)))) (-17.50 = -17.72 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:20 2006