Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,697,290 – 9,697,400 |
Length | 110 |
Max. P | 0.999941 |
Location | 9,697,290 – 9,697,400 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -27.56 |
Consensus MFE | -24.74 |
Energy contribution | -25.66 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -3.20 |
Structure conservation index | 0.90 |
SVM decision value | 4.70 |
SVM RNA-class probability | 0.999941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9697290 110 + 27905053 UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUCCAUAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC ..............(((((((((....((((.....((((((((.......)))))))).........((((.....))))......))))....)))))))))...... ( -31.70) >DroSec_CAF1 21359 110 + 1 UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUUUUCAAUAAGGAUCUAAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC ..............(((((((((....((((......(((((((.......)))))))..........((((.....))))......))))....)))))))))...... ( -30.30) >DroSim_CAF1 20486 110 + 1 UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUUCACAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC ..............(((((((((....((((......(((((((.......)))))))..........((((.....))))......))))....)))))))))...... ( -30.30) >DroEre_CAF1 22158 110 + 1 UUGUCCAAUUACAGCGCUCUCGAUUCAAGCCUUCCAUAAUAAGGGUCUGAACCUUGUUAAUUCAACCCGUUUUCCCAGAACUUCAACGGUUGCAUUAGAGGGCAACACCC ...............(((((((.((((..((((........))))..)))).)....((((.(((((.(((.............)))))))).))))))))))....... ( -24.62) >DroYak_CAF1 21776 110 + 1 UUGUCCAAUUACAGUGCUCUCUAUCUAAGCCUUCCAUAAUAAGGAUCAGAACCCAGUUAAUUCAACCCGUUUUCCCAGAACUUCAACGCUUGCAUUAGAGGGCAACACCC ..............(((((((((..(((((..(((.......))).......................((((.....))))......)))))...)))))))))...... ( -20.90) >consensus UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUCCAUAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC ..............(((((((((....((((.....((((((((.......)))))))).........((((.....))))......))))....)))))))))...... (-24.74 = -25.66 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:17 2006