Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,692,963 – 9,693,059 |
Length | 96 |
Max. P | 0.950068 |
Location | 9,692,963 – 9,693,059 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 73.54 |
Mean single sequence MFE | -16.73 |
Consensus MFE | -6.22 |
Energy contribution | -7.54 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.12 |
Mean z-score | -2.12 |
Structure conservation index | 0.37 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9692963 96 - 27905053 --AUACAUC-AA-ACA--CUUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUUUGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU --.......-..-...--......((((((.......))))))................((((((.((((.((((.....))))...))))))))))..... ( -18.20) >DroSim_CAF1 16260 83 - 1 -------------------UUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUUCGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAGCU -------------------.....((((((.......))))))..................((((.((((.((((.....))))...))))))))....... ( -17.00) >DroEre_CAF1 17440 98 - 1 AAAUUCGUC-AG-AAA--CUCAAUGGCAUCCACAUAUGUUGGCCAUUUACUGGCAAACUCUGGGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU ......(((-(.-...--..(((((((..(((.....(((.((((.....)))).)))..))))))))))..)))).......................... ( -19.80) >DroYak_CAF1 16956 98 - 1 AAAUACAUC-AA-ACA--CUUAUUGCCCUCCACAUAUGAUGGCCAUUUACCGGCAAACUCUGUGCCAUUGCAUGAUAGACUCAUUACCAAUGCACAACAACU .....((((-(.-...--..................)))))(((.......)))......(((((.((((.((((.....))))...)))))))))...... ( -15.95) >DroAna_CAF1 15457 87 - 1 UAAGUCAUUCUGAAUAAUAUUAUU----UCCACAUAUGAUGGGGAACUAUUGUCA-----------AUUGCAUGAUAGACUUAUUACAUAUCCACAAAAUAU ((((((................(.----.((((....).)))..).....(((((-----------......)))))))))))................... ( -12.70) >consensus _AAUACAUC_AA_ACA__CUUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUCUGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU .........................................((((.....)))).......((((.((((.((((.....))))...))))))))....... ( -6.22 = -7.54 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:16 2006