Locus 3589

Sequence ID 3R_DroMel_CAF1
Location 9,692,545 – 9,692,642
Length 97
Max. P 0.619765
window5786

overview

Window 6

Location 9,692,545 – 9,692,642
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.46
Mean single sequence MFE -25.18
Consensus MFE -19.38
Energy contribution -19.66
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.94
Structure conservation index 0.77
SVM decision value 0.18
SVM RNA-class probability 0.619765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9692545 97 + 27905053
UAUAUUUUGGGCAACUCAGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUCGGGUUUAGCUCGCUUUUCGCUUUAAAUGAGCCCAAAUUGCUGGCCCA
.......((((((((.(((.(....))))..)))....((((..(((((.(((((((....((.....))......))))))))))))))))))))) ( -24.40)
>DroSec_CAF1 16727 97 + 1
UAUAUUUUGGGCAACUCAGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUUGGGUUUAGCUCGCUUUUCGCUUUAAAUGAGUCCAAAUUGCUGGCCCA
.......((((((((.(((.(....))))..)))....((((.....(((((..(((....((.....))......)))..)))))..))))))))) ( -22.00)
>DroSim_CAF1 15845 97 + 1
UAUAUUUUGGGCAACUCAGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUUGGGUUUAGCUCGCUUUUCGCUUUAAAUGAGCCCAAAUUGCUGGCCCA
.......((((((((.(((.(....))))..)))....((((.....((((((((((....((.....))......))))))))))..))))))))) ( -26.30)
>DroEre_CAF1 17011 96 + 1
UAUAUUUUGGGCCACUCAGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUUGGGU-UAGCUCGCUUUUCGCUUUAAAUGAGCUUAAAUUGGCGGCCCA
.......((((((...(((.(....)))).......((((((((((....(((.-...))).......((((.....)))))))))))))))))))) ( -28.00)
>DroYak_CAF1 16529 97 + 1
UAUAUUUUGGGCCACUCGGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUUGGGUUUAGCUCGCUUUUCGCUUUAAAUGUGCCCAAAUUGCCGGCCCA
.......((((((...((((........))))...............(((((((.((....((.....))......)).))))))).....)))))) ( -25.20)
>consensus
UAUAUUUUGGGCAACUCAGUGAUCUCCUGCCGUUUUGUCAGUUUAAUUUUGGGUUUAGCUCGCUUUUCGCUUUAAAUGAGCCCAAAUUGCUGGCCCA
.......(((((....((((((....(((.(.....).)))......((((((((((....((.....))......))))))))))))))))))))) (-19.38 = -19.66 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:15 2006