Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,692,279 – 9,692,374 |
Length | 95 |
Max. P | 0.520325 |
Location | 9,692,279 – 9,692,374 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -27.05 |
Consensus MFE | -17.40 |
Energy contribution | -17.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.64 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9692279 95 - 27905053 AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGGACGGAAAA-------AAA-------------- ....(((((((...........)))).((((....))))..)))((((((..((((((......)))...)))..)))----)))...........-------...-------------- ( -22.60) >DroPse_CAF1 12423 113 - 1 AAAACUUGGCCAACAAUUUAUGGGCCACUUGAAUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----C---GAACCGAACCAACCUGGCAAGGAUGUGGGAUGGG ....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).))----)---...(((..(((.(((....)))...)))..))). ( -30.80) >DroEre_CAF1 16758 92 - 1 AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGAGCUGAA----------AA-------------- ......(((((...........)))))..........(((....((((((..((((((......)))...)))..)))----)))...)))...----------..-------------- ( -23.70) >DroYak_CAF1 16266 102 - 1 AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGAGCUGAAAAAAGCUGAAAA-------------- ....(((((((...........)))).((((....))))..)))((((((..((((((......)))...)))..)))----)))..((((......)))).....-------------- ( -26.80) >DroAna_CAF1 14691 109 - 1 AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAACCAGAACCAGGG--GCAGAACCCUGGAAC---------AAAGG ....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).)))....((((((--......))))))...---------..... ( -32.80) >DroPer_CAF1 12272 108 - 1 AAAACUUGGCCAACAAUUUAUGGGCCACUUGAAUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----C---GAACCGAA-----CUGGCAAGGAUGUGGGAUGGG ....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).))----)---...((.(.-----((.(((....))).)).).)) ( -25.60) >consensus AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC____ACCAGAACCGAA_A___CUGGAAA______________ ....(((((((...........)))).((((....))))..)))((((.....(((((......)))))))))............................................... (-17.40 = -17.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:14 2006