Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,688,690 – 9,688,780 |
Length | 90 |
Max. P | 0.635463 |
Location | 9,688,690 – 9,688,780 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.13 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -19.95 |
Energy contribution | -19.57 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.19 |
Mean z-score | -1.75 |
Structure conservation index | 0.63 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9688690 90 + 27905053 --GCGUC-----GAAACUUGGCUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUAUG------UUGCCUUUUCAG--------------GCAG --(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))....------.(((((....))--------------))). ( -29.90) >DroPse_CAF1 8586 109 + 1 --GCGUCAGCGAAAAACUUGGCUAACUUCAGUUG---CCGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG------UUGCCUUUGCAACAUUUUCCAGAGCCGCCG --(((((.((.((..(((((((.(((....))))---))(((.....))).............))))..)).)).)))))((((------((((....)))))))).............. ( -34.80) >DroEre_CAF1 12959 90 + 1 --GCGUC-----GAAACUUGGUUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUGUG------UUGCCUUUUCAG--------------GCAG --(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))....------.(((((....))--------------))). ( -27.90) >DroYak_CAF1 12561 96 + 1 --GCGUC-----GAAACUUGGCUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUGUGUAGCAGUUGCCUUUUCAG--------------GCAG --(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))...........(((((....))--------------))). ( -29.90) >DroAna_CAF1 11485 94 + 1 --GCGUU-----GAAACUUGGCUAACUUUGGUUGCUGCUGGGCCGCACCCAUUUAUUAUUUUAAAGUAGUUGGCCGGCGCGAUG------UUGCCUUUUCAG-------------CGCUG --(((((-----((((...(((.(((....(((((.(((((.(((.((...((((......))))...))))))))))))))))------))))).))))))-------------))).. ( -35.20) >DroPer_CAF1 8518 111 + 1 CAGCGUCAGCGAAAAACUUGGCUAACUUCAGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG------UUGCCUUUGCAACAUUUUCCAGAGCCGCCG ..(((.(.(((......((((((((((.((((((---.((((.....)))).)))))........).)))))))))))))((((------((((....)))))))).......).))).. ( -32.50) >consensus __GCGUC_____GAAACUUGGCUAACUUCGGUUG___CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG______UUGCCUUUUCAG______________GCAG ..(((((............((((((((.(..........(((.....))).((((.....)))).).)))))))))))))........................................ (-19.95 = -19.57 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:13 2006