Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,682,042 – 9,682,138 |
Length | 96 |
Max. P | 0.922860 |
Location | 9,682,042 – 9,682,138 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -24.78 |
Energy contribution | -24.90 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.89 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9682042 96 + 27905053 GUGGCUGUGGUGAUGUUCCUGGUGUUUCUGCUGGUUGUUCUCCACCGAACUUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ((((.((..(((((((...(((((((..(((((........(((((((.....)))..)))))))))...))))))).)))))))..)).)))).. ( -27.00) >DroSec_CAF1 6266 96 + 1 GUGGCUGUGGUGGUGUUCCUGGUGUUUCUGCUGGUUGUUCUCCACCGAACUUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ((((.((((.(((((((...(((((..(..((((..((((......))))...)))..)..)..))))).)))))))))))))))........... ( -28.70) >DroSim_CAF1 5305 96 + 1 GUGGCAGUGGUGGUGUUCCUGGUGUUUCUGCUGGUUGUUCUCCACCGAACUUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ......(((((((((((...(((((..(..((((..((((......))))...)))..)..)..))))).)))))))).))).............. ( -27.20) >DroEre_CAF1 6033 96 + 1 GUGACUGUGGUGGUGUUCCUGGUGUUUUUGCUGGUUGUUCUCCACCGAACAUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ((((.((((.(((((((...(((((..(..((.(.(((((......)))))...).).)..)..))))).)))))))))))))))........... ( -29.60) >DroYak_CAF1 5548 96 + 1 GUGGCUGUGGUGGUAUUCCUGGUGUUUCUGCUGGCUGUUCUCCACCGCGAAUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ((((.((((((((.((..(..((......))..)..))...))))))))......(.(((((.(........).)))))).))))........... ( -26.10) >consensus GUGGCUGUGGUGGUGUUCCUGGUGUUUCUGCUGGUUGUUCUCCACCGAACUUUUCGACGUGGCGGCACUUAACACCACGCAUCAUUUUAAUUAUUU ((((.((..(((((((...(((((((..(((((........((((((((...))))..)))))))))...))))))).)))))))..)).)))).. (-24.78 = -24.90 + 0.12)
Location | 9,682,042 – 9,682,138 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -19.92 |
Energy contribution | -19.60 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.26 |
Structure conservation index | 0.89 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9682042 96 - 27905053 AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAACAACCAGCAGAAACACCAGGAACAUCACCACAGCCAC ............((((((.(((((((..((.(((((((........))..)))))...))...(....).))))))).)..))))).......... ( -21.10) >DroSec_CAF1 6266 96 - 1 AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAACAACCAGCAGAAACACCAGGAACACCACCACAGCCAC ............((.((.((((((((..((.(((((((........))..)))))...))..((.............))))))))))))))..... ( -22.22) >DroSim_CAF1 5305 96 - 1 AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAACAACCAGCAGAAACACCAGGAACACCACCACUGCCAC ...............((.((((((((..((.(((((((........))..)))))...))..((.............))))))))))))....... ( -21.42) >DroEre_CAF1 6033 96 - 1 AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAUGUUCGGUGGAGAACAACCAGCAAAAACACCAGGAACACCACCACAGUCAC ............((((..((((((((..((.(((((((((....))))..)))))...))..((.............))))))))))....)))). ( -23.92) >DroYak_CAF1 5548 96 - 1 AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAUUCGCGGUGGAGAACAGCCAGCAGAAACACCAGGAAUACCACCACAGCCAC ............((.((.((((((((..((.(((((.((........)).)))))...))..((.............))))))))))))))..... ( -23.22) >consensus AAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAACAACCAGCAGAAACACCAGGAACACCACCACAGCCAC ...............((.((((((((..((.(((((..............)))))...))..((.............))))))))))))....... (-19.92 = -19.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006