Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,679,401 – 9,679,513 |
Length | 112 |
Max. P | 0.996931 |
Location | 9,679,401 – 9,679,513 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.23 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -23.10 |
Energy contribution | -23.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.92 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9679401 112 - 27905053 UGCGAAAUUAAUGUGCAUACAGUUGGCCACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU ...(((.......((((((.(((((.((.....)))))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -24.10) >DroSec_CAF1 3709 112 - 1 UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU ...(((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -23.70) >DroSim_CAF1 2755 112 - 1 UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU ...(((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -23.70) >DroEre_CAF1 3651 112 - 1 UGAGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUGUUCU ..((((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...)))) ( -24.10) >DroYak_CAF1 2935 112 - 1 UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CCGUUCU .(((.........((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------.)))... ( -24.40) >DroAna_CAF1 3030 120 - 1 GGGGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCAACCAAGAUCGGUUCG (((..........((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).....)))((((......)))).. ( -30.80) >consensus UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA________CUAUUCU ...(((.......((((((.(((((.(......).)))))))))))....((((((((((......(((........)))......))))))))))....................))). (-23.10 = -23.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:07 2006