Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,676,834 – 9,676,925 |
Length | 91 |
Max. P | 0.698175 |
Location | 9,676,834 – 9,676,925 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -15.30 |
Consensus MFE | -12.30 |
Energy contribution | -12.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.80 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9676834 91 + 27905053 CCAACUCAAAUAAGCCACCAUGCUUCGCAAGCCUGUGCUAGUUUUUAAUAAGUAAUACAUUUAAAGAACUAGAAAUAGUUAGGUUAGUACU ...........((((......)))).((.((((((..(((((((((..(((((.....)))))))))))))).......)))))).))... ( -15.70) >DroSec_CAF1 1178 84 + 1 CCAACU-GAAUUCGCCAUCAUGCUGCUUAAGCCUGUUCUAGUUUUUAAUAAGUGAUUAAUUUAAAGAACUAGAAAUUCUUCA------ACC .....(-(((........((.(((.....))).))(((((((((((..(((((.....))))))))))))))))....))))------... ( -15.80) >DroSim_CAF1 224 84 + 1 CCAACU-AAAUUAGCCAUCAUGCUGCUCAAGCCUGUUCUAGUUUUUAAUAAGUGACUAAUUUAAAGAACUAGAAAUUGUUCA------ACU ......-...........((.(((.....))).))(((((((((((..(((((.....))))))))))))))))........------... ( -14.40) >consensus CCAACU_AAAUUAGCCAUCAUGCUGCUCAAGCCUGUUCUAGUUUUUAAUAAGUGAUUAAUUUAAAGAACUAGAAAUUGUUCA______ACU ..................((.(((.....))).))(((((((((((..(((((.....))))))))))))))))................. (-12.30 = -12.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006