Locus 3581

Sequence ID 3R_DroMel_CAF1
Location 9,676,437 – 9,676,542
Length 105
Max. P 0.606410
window5776

overview

Window 6

Location 9,676,437 – 9,676,542
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 72.27
Mean single sequence MFE -25.13
Consensus MFE -19.55
Energy contribution -20.27
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -0.91
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.606410
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9676437 105 - 27905053
CUCC-----GACGCUGGAAGC----CUGCCUGCAGCUCCUCUUUGGCUUUGCAUAU----ACCCCCGAUCACCGAUUCCGAUUCGGGAUGUCCAGCACCCUCGACAUC--UCGACUCCCU
....-----...((((((...----.....(((((..((.....))..)))))...----...(((((....((....))..)))))...))))))....((((....--))))...... ( -27.70)
>DroSec_CAF1 778 109 - 1
CUCC-----GACGCUGGAAGCCCGCCUGCCUGCAGCUCCUCUUUGCCUUUGCAUAUACAUACCCCCGAUCACCGA------UUCGGGAUGUCCAGCACCCUCGACUUCGUUCGACUCCCC
....-----...((((((............((((((........))...))))..........(((((.......------.)))))...))))))....((((......))))...... ( -25.50)
>DroEre_CAF1 632 90 - 1
CUCCGGUACGACGCUGCAAGC----CUGCCUGCAGUUCCUCCUUGGCUUUGCAUAC----CCCCCU--------------------GAUGUGCAGCACCCUCGACUUG--CCGACUCCCU
...((((((((.((((((.(.----...).))))))........((..(((((((.----(.....--------------------).)))))))..)).)))...))--)))....... ( -22.20)
>consensus
CUCC_____GACGCUGGAAGC____CUGCCUGCAGCUCCUCUUUGGCUUUGCAUAU____ACCCCCGAUCACCGA______UUCGGGAUGUCCAGCACCCUCGACUUC__UCGACUCCCU
............((((((............(((((..((.....))..)))))..........(((((..............)))))...))))))....(((........)))...... (-19.55 = -20.27 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:05 2006