Locus 3573

Sequence ID 3R_DroMel_CAF1
Location 9,671,250 – 9,671,361
Length 111
Max. P 0.655406
window5745

overview

Window 5

Location 9,671,250 – 9,671,361
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -19.98
Consensus MFE -19.24
Energy contribution -18.80
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score 1.19
Structure conservation index 0.96
SVM decision value 0.26
SVM RNA-class probability 0.655406
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9671250 111 - 27905053
CCACUGCCGCCAC-UAUUC------CUCCUCCCAGU--CCCUCCAAAACCCAAUCCCAGUUGCAUCGCCAUUGUCUGAGUCUGCGCCGCCGUCGCGAAGUCUAGUUUAUUGGCGCGACUU
.............-.....------...........--...................((((((...((((.((....((.((.(((.......))).)).))....)).)))))))))). ( -18.40)
>DroSec_CAF1 63065 95 - 1
CCAGUGCCGCCAA-CACUC------CUCCUCCCAGU--C----------------CCAGUUGCAUCGCCAUUGUCUGAGUCUGCGCCACCGUCGCGAAGUCUAGUUUAUUGGCGCAACUU
..((((.......-)))).------...........--.----------------..((((((...((((.((....((.((.(((.......))).)).))....)).)))))))))). ( -20.20)
>DroSim_CAF1 65973 95 - 1
CCAGUGCCGCCAA-CACUC------CUCCUCCCAGU--C----------------CCAGUUGCAUCGCCAUUGUCUGAGUCUGCGCCGCCGUCGCGAAGUCUAGUUUAUUGGCGCGACUU
.(((((.((.(((-(....------...........--.----------------...))))...)).)))))...(((((.((((((.....((........))....))))))))))) ( -20.91)
>DroEre_CAF1 64251 96 - 1
CCACUGCCUCCGCCCAGUU------------------------CCAGUUGCCAUCCCAGUUGCAUUGCCAUUGUCUGAGUCUGCGCCGCCGUCGCGAAGUCUAGUUUAUUGGCGCGACUU
..((((........)))).------------------------..............((((((...((((.((....((.((.(((.......))).)).))....)).)))))))))). ( -19.80)
>DroYak_CAF1 67976 120 - 1
CCACUGUCUCUCCUCAGUCCCUGUUUUCAUCCCAGUUUCCAUGCCAGUUUCCAUCCCAGUUGCAUUGCCAUUGUCUGAGUCUGCGCCGCCGUCGCGAAGUCUAGUUUAUUGGCGCGACUU
..((((........)))).......................................((((((...((((.((....((.((.(((.......))).)).))....)).)))))))))). ( -20.60)
>consensus
CCACUGCCGCCAC_CACUC______CUCCUCCCAGU__C____C_A____C_AUCCCAGUUGCAUCGCCAUUGUCUGAGUCUGCGCCGCCGUCGCGAAGUCUAGUUUAUUGGCGCGACUU
..((((........)))).......................................((((((...((((.((....((.((.(((.......))).)).))....)).)))))))))). (-19.24 = -18.80 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:37 2006