Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,669,623 – 9,669,841 |
Length | 218 |
Max. P | 0.941239 |
Location | 9,669,623 – 9,669,730 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -33.21 |
Energy contribution | -33.77 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.93 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9669623 107 + 27905053 UAUAUUUAU-------------AUACGUAGUUAACCACUGUGCGAUGCGUCUUCGUGGAUAAUGCGGCGCUUUGCGAUUUGCAGUUGCAAAGUUUGUCCAAGACGCCAAUGCGAGUGGCG .........-------------............(((((.((((..((((((...(((((((......((((((((((.....)))))))))))))))))))))))...))))))))).. ( -36.30) >DroSec_CAF1 61444 107 + 1 UACAUUUAU-------------AUACGUAGUUAACCACGGUGCGAUGCGUCUUUGUGGAUAAUGCGGCGCUUUGCGAUUUGCAGUUGCAAAGUUUGUCCAAGACGCCAAUGCGAGUGGAG .........-------------............((((..((((..((((((...(((((((......((((((((((.....)))))))))))))))))))))))...)))).)))).. ( -36.20) >DroSim_CAF1 64336 107 + 1 UAUAUUUAU-------------AUACGUAGUUACCCACUGUGCGAUGCGUCUUCGUGGAUAAUGCGGCGCUUUGCGAUUUGCAGUUGCAAAGUUUGUCCAAGACGCCAAUGCGAGUGGAG .........-------------............(((((.((((..((((((...(((((((......((((((((((.....)))))))))))))))))))))))...))))))))).. ( -36.80) >DroYak_CAF1 66425 119 + 1 UAUAUGCAUAAUUUUAAAAGGUAUAACUCCUUAACCACAGUGCGGUGCGUCUUCGUGGAAAAUGCGGCGCUUUGCGGU-UGCAGUUGCAAAGUUUGUCCAAGACGCCAAUGCGAGUGGGA .................((((.......))))..((((..((((..((((((...((((((((...(((..((((...-.)))).)))...)))).))))))))))...)))).)))).. ( -33.20) >consensus UAUAUUUAU_____________AUACGUAGUUAACCACUGUGCGAUGCGUCUUCGUGGAUAAUGCGGCGCUUUGCGAUUUGCAGUUGCAAAGUUUGUCCAAGACGCCAAUGCGAGUGGAG ..................................(((((.((((..((((((...(((((((......((((((((((.....)))))))))))))))))))))))...))))))))).. (-33.21 = -33.77 + 0.56)
Location | 9,669,623 – 9,669,730 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -24.27 |
Energy contribution | -24.52 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.89 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9669623 107 - 27905053 CGCCACUCGCAUUGGCGUCUUGGACAAACUUUGCAACUGCAAAUCGCAAAGCGCCGCAUUAUCCACGAAGACGCAUCGCACAGUGGUUAACUACGUAU-------------AUAAAUAUA .((((((.((....((((((((((.....(((((....)))))..((........))....))))...))))))...))..))))))...........-------------......... ( -27.70) >DroSec_CAF1 61444 107 - 1 CUCCACUCGCAUUGGCGUCUUGGACAAACUUUGCAACUGCAAAUCGCAAAGCGCCGCAUUAUCCACAAAGACGCAUCGCACCGUGGUUAACUACGUAU-------------AUAAAUGUA ........(((((.((((((((((.....(((((....)))))..((........))....))))...)))))).......(((((....)))))...-------------...))))). ( -26.40) >DroSim_CAF1 64336 107 - 1 CUCCACUCGCAUUGGCGUCUUGGACAAACUUUGCAACUGCAAAUCGCAAAGCGCCGCAUUAUCCACGAAGACGCAUCGCACAGUGGGUAACUACGUAU-------------AUAAAUAUA .((((((.((....((((((((((.....(((((....)))))..((........))....))))...))))))...))..))))))...........-------------......... ( -27.00) >DroYak_CAF1 66425 119 - 1 UCCCACUCGCAUUGGCGUCUUGGACAAACUUUGCAACUGCA-ACCGCAAAGCGCCGCAUUUUCCACGAAGACGCACCGCACUGUGGUUAAGGAGUUAUACCUUUUAAAAUUAUGCAUAUA ..(((..(((....)))...)))........((((.....(-((((((..(((..((.(((((...))))).))..)))..)))))))((((.......)))).........)))).... ( -28.40) >consensus CUCCACUCGCAUUGGCGUCUUGGACAAACUUUGCAACUGCAAAUCGCAAAGCGCCGCAUUAUCCACGAAGACGCAUCGCACAGUGGUUAACUACGUAU_____________AUAAAUAUA ..((((..((....((((((((((.....(((((....)))))..((........))....))))...))))))...))...)))).................................. (-24.27 = -24.52 + 0.25)
Location | 9,669,730 – 9,669,841 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -20.64 |
Energy contribution | -20.92 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.76 |
Structure conservation index | 0.69 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9669730 111 - 27905053 -------GGGGAUGCGGAGACCUCGAGGCGCAUUCCUGCCACAAAACUGUUGCAAUUAAUUGCAUAAAAGUUCUAAAUUGUCAGCCAGAACCCCGCUCCAAUCCACCCACCAU--ACCGC -------((((((..((((...((..((((((....))).((((((((..(((((....)))))....)))).....))))..))).))......)))).)))).))......--..... ( -25.90) >DroSec_CAF1 61551 103 - 1 -------GGGGAUGUGGAGCCCUCGAGCCGCAUUCCUGCCACAAAACUGUUGCAAUUAAUUGCAUAAAAGUUCUAAAUUGUCAGCCAGAACCCCACUCCAAUCCAC----------CCAC -------((((((((((..(....)..))))))..((((.((((((((..(((((....)))))....)))).....))))..).)))..))))............----------.... ( -23.80) >DroSim_CAF1 64443 113 - 1 -------GGGGAUGUGGAGCCCUCGAGGCGCAUUCCUGCCACAAAACUGUUGCAAUUAAUUGCAUAAAAGUUCUAAAUUGUCAGCCAGAACCCCGCUCCAACCCACCCACCUCCACCCAC -------(((....((((((......((((......))))......(((((((((((....((......))....))))).))).)))......)))))).....)))............ ( -28.90) >DroEre_CAF1 62610 102 - 1 -----ACGGGGAAGUGGAGCCCUCGGGGCACAUUCCAGCCACAAAACUGUUGCAAUUAAUUGCGUAAAAGUUCUAAAUUGUCAGCCAGC-CCCCGCACC--CCCAC----------CAUC -----..((((..((((.((((...)))).................(((((((((((....((......))....))))).))).))).-..))))..)--)))..----------.... ( -28.40) >DroYak_CAF1 66544 109 - 1 GGGAGGUGGGGAGGUGGGGCCCUUGGGGCACAUUCCUGCCACAAAACUGUUGCAAUUAAUUGCAUAAAAGUUCUAAAUUGUCAGCCAGC-CCCCGCACCACCCCGC----------CAUC ....(((((((.((((((((...(((((((......))))((((((((..(((((....)))))....)))).....))))...)))))-)))...))).))))))----------)... ( -43.50) >consensus _______GGGGAUGUGGAGCCCUCGAGGCGCAUUCCUGCCACAAAACUGUUGCAAUUAAUUGCAUAAAAGUUCUAAAUUGUCAGCCAGAACCCCGCUCCAACCCAC__________CCAC .......((((.(.(((.........((((......))))((((((((..(((((....)))))....)))).....))))...))).).)))).......................... (-20.64 = -20.92 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:30 2006