| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,386,803 – 1,386,911 |
| Length | 108 |
| Max. P | 0.910619 |
| Location | 1,386,803 – 1,386,911 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -24.29 |
| Energy contribution | -27.68 |
| Covariance contribution | 3.39 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1386803 108 + 27905053 GGCAACGGCACCUGGCUGAGAAACGACUUAAUGUUG---UUUUUCGGCAUGGGGCUAUGUCCAAUUGGCGACA---GUUGCCAAAGGAACAAGUUCCAUUUUUGAAGUGCCUUC (....)(((((...(((((((((((((.....))))---)))))))))((((((((...(((..(((((((..---.))))))).)))...)))))))).......)))))... ( -47.50) >DroVir_CAF1 2941 94 + 1 ---------CCAUUGCUGAUC----AUUUUUCGUGGUACGCUUUUGAUAUU-GACUAUGUCCAUUGGUCGACAAGCGUUUUUAUG---ACAACUUCCAUUUUUACAUGCAC--- ---------....((((((((----((.....)))))(((((((((((..(-(........))...))))).)))))).......---................)).))).--- ( -15.10) >DroSec_CAF1 2597 108 + 1 GGCAACGGCACCUGGCUAAGAAACGACUUUAUGUUG---GUUUUCGGCAUGGGGCUAUGUCCAAUUGGCGACA---GUUGCCAAAGGAACAAGUUCCAUUUUUGAAGAGCCUUC (....)(((.....((..((((.((((.....))))---.))))..))((((((((...(((..(((((((..---.))))))).)))...)))))))).........)))... ( -35.10) >DroSim_CAF1 2618 108 + 1 GGCAACGGCACCUGGCUGAGAAACGACUUUAUGUUG---GUUUUCGGCAUGGGGCUAUGUCCAAUUGGCGACA---GUUGCCAAAGGAACAAGUUCCAUUUUUGAAGAGCCUUC (....)(((.....((((((((.((((.....))))---.))))))))((((((((...(((..(((((((..---.))))))).)))...)))))))).........)))... ( -39.90) >DroEre_CAF1 2596 108 + 1 GGCAACGGCUCCUGGCUGAGAAACGUCUUUAGGUUG---GUUUUCGGCAUGGGGGUAUGUCCAAUUGGCGACA---GUUGCCAAGGGAACAAGUUCCAUUUUUGAAGAGCCUUC (....)(((((...((((((((.((.(.....).))---.))))))))...((..(.(((((..(((((((..---.))))))).)).))).)..)).........)))))... ( -35.60) >DroYak_CAF1 2711 108 + 1 GGCAAUGGCUCCUGGCUGAGAAACGUCUUUAUGUUG---GUUUUCGACAUUGGGCUAUGUCCAAUUGGCGACA---GUUGCCAAAGGAACAAGUUCCAUUUUUGAAGAGCCUUC ......((((((..((.((((....))))...))..---)..(((((...((((((...(((..(((((((..---.))))))).)))...)).))))...))))))))))... ( -32.10) >consensus GGCAACGGCACCUGGCUGAGAAACGACUUUAUGUUG___GUUUUCGGCAUGGGGCUAUGUCCAAUUGGCGACA___GUUGCCAAAGGAACAAGUUCCAUUUUUGAAGAGCCUUC ......(((((...((((((((.((((.....))))....))))))))((((((((.(((.(..((((((((....))))))))..).))))))))))).......)))))... (-24.29 = -27.68 + 3.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:08 2006