Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,669,251 – 9,669,353 |
Length | 102 |
Max. P | 0.655261 |
Location | 9,669,251 – 9,669,353 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -20.24 |
Energy contribution | -20.84 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.76 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9669251 102 + 27905053 -----CCAUUCGCCGUUUCAUUAUCAAACUGGCCA-AGAACAUAAUUUGACUAUGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGGGCCAAUUUGCAGUUCUC -----.(((((((.(((.(..........((((((-....((.....))....))))))......((....))).))).))------------))))).((((((.........)))))) ( -26.90) >DroSec_CAF1 61033 101 + 1 -----CCAUUCGCCGUUUCAUUAUCA-ACUGGCCA-AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGGGCCAAUUUGCAGUUCUC -----.(((((((.(((.(.......-..(((((.-....((.....)).....)))))......((....))).))).))------------))))).((((((.........)))))) ( -25.30) >DroSim_CAF1 63938 102 + 1 -----CCAUUCGCCGUUUCAUUAUCAAACUGGCCA-AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGUGCCAAUUUGCAGUUCUC -----..((((((.(((.(..........(((((.-....((.....)).....)))))......((....))).))).))------------))))((((((....))))))....... ( -24.70) >DroEre_CAF1 61831 112 + 1 ---UGCCAUUUGCCGU-----UAUCAAACUGGCCAAAGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGCAACAGCGAAUGCGAAUGCGAGGGCCAAUUUGCAGUUCUC ---(((((..((..((-----(....)))(((((..((..((.....)).))..)))))..))..)))))...(((...((....))...)))(((((((((......)))))).))).. ( -27.80) >DroYak_CAF1 65815 119 + 1 CCAUUCCAUUGGCCGUUUCAUUAUCAAACUGGCCAAAGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGUAAUAGCAACAGC-AAUGCGAGGGCCAAUUUGCAGUUCUC ........((((((((((.......)))).))))))(((((.....(((.((...(((((....)))))...)))))........((....))-..((((((......))))))))))). ( -28.60) >consensus _____CCAUUCGCCGUUUCAUUAUCAAACUGGCCA_AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC____________GAAUGCGAGGGCCAAUUUGCAGUUCUC ...........(((((((.......)))).)))...(((((.....(((.((...(((((....)))))...)))))...................((((((......))))))))))). (-20.24 = -20.84 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:28 2006