Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,667,925 – 9,668,045 |
Length | 120 |
Max. P | 0.992210 |
Location | 9,667,925 – 9,668,045 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -36.74 |
Consensus MFE | -35.84 |
Energy contribution | -35.64 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.36 |
Structure conservation index | 0.98 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9667925 120 + 27905053 AGACGUCGACGCGUCAGUCCUCCAAUUUCGGAGGCGCGCUGGCAACACUUUCGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGGCCCU .(((((....))))).((((((.......((.(((.((.((....))....)).))).))..........((((((((.((((..........))))..))))))))....))))))... ( -37.00) >DroSec_CAF1 59736 120 + 1 AGACGUCGACGCGUCAGUCCUCCAAUUUCGGAGGCGCGCUGGCAACACUUUCGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGACCCU .(((((....))))).((((((.......((.(((.((.((....))....)).))).))..........((((((((.((((..........))))..))))))))....))))))... ( -37.60) >DroSim_CAF1 62638 120 + 1 AGACGUCGACGCGUCAGUCCUCCAAUUUCGGAGGCGCGCUGGCAACACUUUCGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGGCCCU .(((((....))))).((((((.......((.(((.((.((....))....)).))).))..........((((((((.((((..........))))..))))))))....))))))... ( -37.00) >DroEre_CAF1 60480 118 + 1 AGACGUCGACGCGUCAGUCCUGCAAUUUCGGAGGCGCGCUGGCAACACUUUUGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGGCC-- .(((((....))))).((((.......(((..((.((((((....))..(((((....))))).(((((..((.(.(((((....))))).)))..))))))))).))..))))))).-- ( -35.41) >DroYak_CAF1 64447 120 + 1 AGACGUCGACGCGUCAGUCCUCCAAUUUCGGAGGCGCGCUGGCAACACUUUUGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGGCCCU ....((((.((((.....(((((......))))))))).)))).........(((((...........(((.(((((((((....))))).(((.....))).))))...))).))))). ( -36.70) >consensus AGACGUCGACGCGUCAGUCCUCCAAUUUCGGAGGCGCGCUGGCAACACUUUCGGGCCACCAAAUCAAAUCGUGUGCUGUUUAUUUAAAUAACCAUAAUUUGGCGCACCAUCGAGGGCCCU .(((((....))))).((((((.......((.(((.((.((....))....)).))).))..........((((((((.((((..........))))..))))))))....))))))... (-35.84 = -35.64 + -0.20)
Location | 9,667,925 – 9,668,045 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -42.18 |
Consensus MFE | -39.66 |
Energy contribution | -39.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.02 |
Mean z-score | -1.93 |
Structure conservation index | 0.94 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9667925 120 - 27905053 AGGGCCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCGAAAGUGUUGCCAGCGCGCCUCCGAAAUUGGAGGACUGACGCGUCGACGUCU .((((..(((((((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))).((((((....))))))....)).)))))).)))) ( -43.90) >DroSec_CAF1 59736 120 - 1 AGGGUCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCGAAAGUGUUGCCAGCGCGCCUCCGAAAUUGGAGGACUGACGCGUCGACGUCU ..(((((((((.((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))))))))((....)))))))))((((......)))). ( -46.20) >DroSim_CAF1 62638 120 - 1 AGGGCCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCGAAAGUGUUGCCAGCGCGCCUCCGAAAUUGGAGGACUGACGCGUCGACGUCU .((((..(((((((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))).((((((....))))))....)).)))))).)))) ( -43.90) >DroEre_CAF1 60480 118 - 1 --GGCCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCAAAAGUGUUGCCAGCGCGCCUCCGAAAUUGCAGGACUGACGCGUCGACGUCU --.((..(((..((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))))))..)))....))......((((......)))). ( -36.70) >DroYak_CAF1 64447 120 - 1 AGGGCCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCAAAAGUGUUGCCAGCGCGCCUCCGAAAUUGGAGGACUGACGCGUCGACGUCU .((((..(((((((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))).((((((....))))))....)).)))))).)))) ( -40.20) >consensus AGGGCCCUCGAUGGUGCGCCAAAUUAUGGUUAUUUAAAUAAACAGCACACGAUUUGAUUUGGUGGCCCGAAAGUGUUGCCAGCGCGCCUCCGAAAUUGGAGGACUGACGCGUCGACGUCU .((((..(((((((((((((((((..(((((.(((....))).))).))..)))))...(((..((.(....).))..))))))).((((((....))))))....)).)))))).)))) (-39.66 = -39.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:25 2006