Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,667,596 – 9,667,704 |
Length | 108 |
Max. P | 0.500000 |
Location | 9,667,596 – 9,667,704 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.34 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -17.88 |
Energy contribution | -18.12 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.62 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9667596 108 - 27905053 CAUUAGCCGCACUGUGCGGCAUUGACCUGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUACAAAAAUUC .....(((((.....))))).....((((((...((((.(((......)))))))..((......))...((-((....)))----------))).))))................... ( -29.10) >DroSec_CAF1 59407 108 - 1 CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUUCAAAAAUUC .....(((((.....))))).((((....(((.....))).......(..(((....((......))...((-((....)))----------).)))..).........))))...... ( -27.10) >DroSim_CAF1 62309 108 - 1 CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUACAAAAAUUC .....(((((.....)))))......((.(((.....)))..........(((....((......))...((-((....)))----------).))).))................... ( -26.80) >DroYak_CAF1 64102 115 - 1 ---UAGCCGCACGGUGCGGCAUUGACCCGGCCUAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAAAAGGCCCAAUGAUCUCCGGCAUGCGCACAG-AGAAGAAGUAUUGAAAAUC ---..(((((.....)))))........(((((.((((.(((......)))))))..((......))...)))))(((((.((((.(((....)).).)-))).....)))))...... ( -32.40) >consensus CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG_CCAAAUGGC__________UGCACAGGAAAAUAAAUACAAAAAUUC .....(((((.....))))).....((.(((...((((.(((......)))))))..((......))..........................)).).))................... (-17.88 = -18.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:23 2006