Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,648,416 – 9,648,525 |
Length | 109 |
Max. P | 0.704052 |
Location | 9,648,416 – 9,648,525 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -33.88 |
Consensus MFE | -19.38 |
Energy contribution | -21.88 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.08 |
Mean z-score | -2.29 |
Structure conservation index | 0.57 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9648416 109 + 27905053 UUUCAGCUGAGAGCGGGCAGAUGCACUGCGCGAAAAACGGGAGUCAAAGUUCGAUUUGAUUU----------AUUGAGAGUUAUGUAAAAUCUCAGGCUUCUCAAAUUUGAUUAAAUUU ..((((.(((((((((((....)).))))((.........((((((((......))))))))----------.((((((...........)))))))).)))))...))))........ ( -26.70) >DroSec_CAF1 41194 118 + 1 UUUCAGCUGAGAGCGGGCAGAUGCACUGCGCGAAAAACGGGGGUCAAAGUUCGAUUUGAUUUCCGUUGUAUUCUUGAGAGUUGUGUAACAGCUCAAGCUGCUCA-AUUUGAUUAAAUUU ..((((.((((((((.((((.....)))).)(((.(((((..((((((......))))))..)))))...)))....((((((.....))))))..))).))))-..))))........ ( -41.50) >DroSim_CAF1 43661 119 + 1 UUUCAGCUGAGAGCGGCCAGAUGCACUGCGCGAAAAACGGGGGUCAAAGUUCGAUUUGAUUUCCGUUGUGUUCUUGAGAGUUAUGUAAAAUCUCAAGCUGCUCAAAUUUGAUUAAAUUU ..((((.(..(((((((.....((.....))(((.(((((..((((((......))))))..)))))...)))((((((...........)))))))))))))..).))))........ ( -37.90) >DroYak_CAF1 42775 115 + 1 UUUGAGCUGAGAGCGGGCAGAUGCACUGCGCGAAAAACUGUAGUCAAAGUUUGAUUUAUUUUCCGUAGUAUUAUUGAGAGUUUUUUAUAA-AUCACGCAUUU--GCUUUGAU-AAGUUC ...(((((......((((((((((((((((.(((((.....(((((.....)))))..))))))))))).....(((...((......))-.))).))))))--))))....-.))))) ( -29.40) >consensus UUUCAGCUGAGAGCGGGCAGAUGCACUGCGCGAAAAACGGGAGUCAAAGUUCGAUUUGAUUUCCGUUGUAUUAUUGAGAGUUAUGUAAAAUCUCAAGCUGCUCAAAUUUGAUUAAAUUU ...((((((((..((.((((.....)))).))....((((((((((((......)))))))))))).........................)))).))))................... (-19.38 = -21.88 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:15 2006