Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,642,251 – 9,642,342 |
Length | 91 |
Max. P | 0.543642 |
Location | 9,642,251 – 9,642,342 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.74 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -17.98 |
Energy contribution | -19.90 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.06 |
Mean z-score | -1.74 |
Structure conservation index | 0.68 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9642251 91 + 27905053 GCCUGAAUCAAUGUUUAUAUUGUAUAUGAAUC-GCCAGGGCUUCGGAAUCGG----GGUAUC---AACGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC (((((...(((((....)))))....((((((-(..(((((((((....)))----)))...---..((....)))))..))))))))))))....... ( -23.50) >DroSec_CAF1 34987 91 + 1 GUCUGAAUCAAUGUUUAU-----AUAUGAAUCCGGCAGGGCUUCGGAAUCGGAAUCGGAAUC---AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC (((.((.(((.(((....-----)))))).)).))).((((((..(((((((((.((((.((---...)).))))..)))))))))..))))))..... ( -25.80) >DroSim_CAF1 37474 91 + 1 GCCUGAAUCAAUGUUUAU-----AUAUGAAUCCGGCAGGGCUUCGGAAUCGGAAUCGGAAUC---AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC (((.((.(((.(((....-----)))))).)).))).((((((..(((((((((.((((.((---...)).))))..)))))))))..))))))..... ( -28.50) >DroEre_CAF1 35746 83 + 1 GUCUGAAUCAAUGUUUAU-----AUAUGAAUC-GGCAGGGCUUCGGAUUCGGAUU------CGGAAUCGAAUUCGCUUUUCGAUUCGCAGGCCUC---- (.((((.(((.(((....-----)))))).))-))).((((((((((((((((((------((....))))))))......)))))).)))))).---- ( -25.20) >DroYak_CAF1 36476 93 + 1 GUCUGAAUCAAUGUUUAU-----AUAUGAAUC-GGCAGGGCUUCGGAUUCGGAAUCGGAAUCGGAAUCGAAUUCGCUUUCCGAUUCACAGGCCUCACUC (((((.....((((....-----))))(((((-((.(((((...((((((((..(((....)))..)))))))))))))))))))).)))))....... ( -29.20) >consensus GUCUGAAUCAAUGUUUAU_____AUAUGAAUC_GGCAGGGCUUCGGAAUCGGAAUCGGAAUC___AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC (((.((.(((.(((.........)))))).)).))).((((((..((((((((..((((.((......)).))))...))))))))..))))))..... (-17.98 = -19.90 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:12 2006