Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,385,672 – 1,385,769 |
Length | 97 |
Max. P | 0.845911 |
Location | 1,385,672 – 1,385,769 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -16.46 |
Energy contribution | -16.44 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.42 |
Mean z-score | -1.65 |
Structure conservation index | 0.61 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1385672 97 - 27905053 UCUAGCCGUUCUUGCGCAU----AAGGUGGGAGUUGGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUCU--UUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC (((......((((((((..----((((((((((((((((...(((....)))))))))))))(.....).--..)))))).-----..))))).)))......))).. ( -27.80) >DroSec_CAF1 1448 97 - 1 UCUAGCCGUGCUUGCGCAU----AAGGUGAAAGUUAGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUUU--UUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC (((.......(((((((..----((((((((((((((((...(((....)))))))))))..........--)))))))).-----..))))).)).......))).. ( -25.14) >DroSim_CAF1 1463 99 - 1 UCUAGCCGUGCUUGCGCAU----AAGGUGAAAGUUAGGUCGUCCAGUUCUGGACCUAACUUCGUCGAUUUUUUUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC (((.......(((((((..----(((((((((((((((...((((....)))))))))))............)))))))).-----..))))).)).......))).. ( -24.84) >DroEre_CAF1 1493 96 - 1 UCCAACCGUUUUUGCGCAU----AAGCUAGGAGUUAGGUCGUCCAGUUCUGGGCCUAACUUUGUUAAUUU--GUUACUUUU-----CCGCGCAUAUAUAAAUAA-AUC ............(((((..----......((((((((((...(((....)))))))))))))((......--...))....-----..)))))...........-... ( -20.80) >DroYak_CAF1 1573 96 - 1 UCUAGCCGUUCUUGCGCAU----AACGUAGGAGUUAGGUCGUCCAGUUCUGGGUCUAACUUCGUUAAUUU--UUUACAUUU-----CCGCGCAUAGAUAAAUAA-AUC .......(((..(((((..----......(((((((((...((((....)))))))))))))((......--...))....-----..)))))..)))......-... ( -22.40) >DroAna_CAF1 1481 99 - 1 UUGAAUUAUGGUUGCGCGUUGAUUAAGUGGGGGGCAG-----AGAGCCCUGGCCCUCCAUUUUAUUAUUU--UUUGCUCUGUUGGGCAGCGCACACAUAAAGA--UUC .....(((((..(((((..((((.(((((((((((((-----......)).))))))))))).))))...--..(((((....))))))))))..)))))...--... ( -40.10) >consensus UCUAGCCGUGCUUGCGCAU____AAGGUGGGAGUUAGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUUU__UUUACUUUU_____CCGCGCAUAGAUAAAUAA_AUC ............(((((......((((((((((((((((...(((....))))))))))))............)))))))........)))))............... (-16.46 = -16.44 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:07 2006