Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,623,920 – 9,624,027 |
Length | 107 |
Max. P | 0.576989 |
Location | 9,623,920 – 9,624,027 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.23 |
Mean single sequence MFE | -37.16 |
Consensus MFE | -33.48 |
Energy contribution | -33.60 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.16 |
Structure conservation index | 0.90 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9623920 107 + 27905053 GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCUCCAUGAGGAUGGGGGCCUCAAGUGUCGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))....(((((.......))))).............. ( -35.00) >DroSec_CAF1 16910 107 + 1 GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCUCCAUGACAACGAGGGCCCCAAGUGUUGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))......((((((..(....)...))))))...... ( -35.00) >DroSim_CAF1 18000 107 + 1 GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCUCCAUGACGAUGGGGGCCCCAAGUGUCGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))..(((((((...((....))...)))))))..... ( -41.00) >DroEre_CAF1 17378 107 + 1 GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGCCAUGACGGUGUGGGCCCCAAGUGUCGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))..(((((((.(.(((...)))).)))))))..... ( -38.60) >DroYak_CAF1 17462 107 + 1 GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGCCAUGUAGGUGUGGCCCCCAAGUGUCGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))(((((......)))))................... ( -36.20) >consensus GCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCUCCAUGACGAUGGGGGCCCCAAGUGUCGUGUAGUC ((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))..(((((((....((...))...)))))))..... (-33.48 = -33.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:03 2006