Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,623,659 – 9,623,749 |
Length | 90 |
Max. P | 0.973087 |
Location | 9,623,659 – 9,623,749 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -30.04 |
Energy contribution | -29.82 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.42 |
Structure conservation index | 0.93 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9623659 90 - 27905053 ----AUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU-GUGGAGUG-------CG-------- ----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))))(((-.......)-------))-------- ( -31.10) >DroVir_CAF1 19307 81 - 1 ----CUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGGCAU-G------------------------ ----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))))...-.------------------------ ( -29.90) >DroGri_CAF1 21304 90 - 1 ----AUUGCCGAAACCCGGGAUUGAACCGGGGACAUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCACUCUUAUUGCUUG-------A--------- ----..(((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))).............-------.--------- ( -30.20) >DroSec_CAF1 16672 94 - 1 UCUUGUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU-GUUAGACG-------UG-------- ....(((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))))..-........-------..-------- ( -34.50) >DroWil_CAF1 15907 105 - 1 ----CUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGCUGU-GUCGUAGGCAGUCGAAGGCCCUGGG ----....(((.....))).......((((((.((.((((((.....)))))).((((........))))...(((((((((..-......))).)))))))))))))). ( -35.80) >DroAna_CAF1 16925 84 - 1 ----AAUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCA-------UAUGAG-------UG-------- ----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))-------).....-------..-------- ( -31.60) >consensus ____AUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU_GUUGUAUG_______AG________ ......(((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))).............................. (-30.04 = -29.82 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:02 2006