Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,614,171 – 9,614,272 |
Length | 101 |
Max. P | 0.587114 |
Location | 9,614,171 – 9,614,272 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -18.20 |
Energy contribution | -19.40 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.04 |
Mean z-score | -1.18 |
Structure conservation index | 0.77 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9614171 101 - 27905053 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------AAACUCAUUCAACACUUUGGC .((..(((....((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------..............)))..)) ( -24.60) >DroSec_CAF1 7380 86 - 1 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------AUUCUA--------------- (((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------......--------------- ( -23.30) >DroSim_CAF1 7411 101 - 1 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------ACACUCUUUCAACCCUUUGGA (((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------............((....)). ( -23.40) >DroEre_CAF1 7505 107 - 1 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUACUUUCUCUCUGCACACUUUCAACCCUUUGUG (((....)))((((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).............)).(((............))) ( -25.90) >DroYak_CAF1 7530 101 - 1 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUGUGGGUUAUGAGCCGCCUUCCCUGCACACAGAGAAAUGCUUU------ACACACUUUCAACCCUUUGUG .((.(((((.((.....((((((.(....((((....)))).))))))))).)))))....)).(((((((.........------..............))))))) ( -21.70) >DroAna_CAF1 6827 86 - 1 GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGGCGC---CUCAGUACACAGAAAA-CAUUUU------AAGAUUAUUA----------- .((((((((.((.....((((((.(((((.......)))))..)))))).))))---))))))..........-......------..........----------- ( -22.70) >consensus GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU______ACACUCUUUCAACCCUUUG__ (((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).................................. (-18.20 = -19.40 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:00 2006