Locus 3550

Sequence ID 3R_DroMel_CAF1
Location 9,607,970 – 9,608,080
Length 110
Max. P 0.798228
window5705

overview

Window 5

Location 9,607,970 – 9,608,080
Length 110
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 86.34
Mean single sequence MFE -35.86
Consensus MFE -30.03
Energy contribution -30.62
Covariance contribution 0.59
Combinations/Pair 1.16
Mean z-score -2.06
Structure conservation index 0.84
SVM decision value 0.61
SVM RNA-class probability 0.798228
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9607970 110 + 27905053
GGCAACGCGGGCAAACCACAA-ACAGCUGUCACUUGGCCGGCAUUUGAAAGCUUCGCACAUGCCGGCUGGUCUA-CUGUGAAAA--AAAAACCUGGUUGCCAUUCCUUUGUUUU
((((((.((((..........-((((..(....(..((((((((.((.........)).))))))))..).)..-)))).....--.....))))))))))............. ( -37.65)
>DroSec_CAF1 1169 109 + 1
GGCAACGCGGGCAAACAACAA-ACAGCUGUCACUUGGCCGGCAUUUGAAAGCUCCGCACAUGCCGGCUGGUCUA-CUGUGAAAA---AAAACCUGGUUGCCAUUCCUUUGUUUU
((((((.((((..........-((((..(....(..((((((((.((.........)).))))))))..).)..-)))).....---....))))))))))............. ( -37.21)
>DroSim_CAF1 1154 109 + 1
GGCAACGCGGGCAAACAACAA-ACAGCUGUCACUUGGCCGGCAUUUGAAAGCUCCGCACAUGCCGGCUGGUCUA-CUGUGAAAA---AAAACCUGGUUGCCAUUCCUUUGUUUU
((((((.((((..........-((((..(....(..((((((((.((.........)).))))))))..).)..-)))).....---....))))))))))............. ( -37.21)
>DroEre_CAF1 1255 108 + 1
GGCAACGCGGGCAAACCACAA-ACAGCUGUCACCUGGCCGGCAUUUGAAAGCUCCGCACAUGCCGGCUGGUCUA-CUGUGAAA----AAAACCUGGUUGCCAUUCCUUUGUUUU
((((((.((((..........-((((..(..(((.(((((((((.((.........)).)))))))))))))..-))))....----....))))))))))............. ( -38.47)
>DroYak_CAF1 1209 106 + 1
GGCAACGCGGGCAAACCACAA-ACAGCUGUCACCUGGCCGGCAUUUGAAAGCUCCGCACAUGCCGGCUGGUCUA-CUGUGAAA-----AAACCUGGCUGCCAUUCCUUUGUUU-
((((.(.((((..........-((((..(..(((.(((((((((.((.........)).)))))))))))))..-))))....-----...))))).))))............- ( -33.83)
>DroAna_CAF1 1188 100 + 1
GGCAACAUGGGCUAACGACAAAACAGCUGG------CCCGGCAUUUGAAAGCUUU--AAACGCCGGCUGGUCUGGCAGUGAAUGUGGUAUAUCGGGUUGCUAUU-----GUUU-
((((((.(((((((....((...((((..(------((.(((.(((((.....))--))).))))))..).)))....))....))))...))).))))))...-----....- ( -30.80)
>consensus
GGCAACGCGGGCAAACCACAA_ACAGCUGUCACUUGGCCGGCAUUUGAAAGCUCCGCACAUGCCGGCUGGUCUA_CUGUGAAAA___AAAACCUGGUUGCCAUUCCUUUGUUUU
((((((.((((...........((((.......(..((((((((.((.........)).))))))))..).....))))............))))))))))............. (-30.03 = -30.62 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:59 2006