Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,383,274 – 1,383,380 |
Length | 106 |
Max. P | 0.500000 |
Location | 1,383,274 – 1,383,380 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.81 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -13.24 |
Energy contribution | -14.04 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.07 |
Mean z-score | -2.07 |
Structure conservation index | 0.59 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1383274 106 + 27905053 GGAUAAAAAAGUCCUUUGGAUUUAAGUAUGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUGAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGGGCUUUAGU .......((((((((((((((.((((((((((((....))))......((((((((((((...))))))))))))...)))))))).))))))..))))))))... ( -30.80) >DroSec_CAF1 9218 106 + 1 GGAUAAAAAAGUCCUUAGGAUUUAAGUACGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACGUACUUAUGUUCGAAAAGAGCUUUAGU .......((((..(((.((((.((((((((((((....))))......((((((((((((...))))))))))))...)))))))).))))...)))..))))... ( -26.60) >DroSim_CAF1 9468 106 + 1 GGAUAAAAAAGUCCUUAGGAUUUAAGUAAGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGAGCUUUAGU .......((((..(((.((((.((((((((((((....))))))....((((((((((((...)))))))))))).....)))))).))))...)))..))))... ( -21.80) >DroEre_CAF1 8934 98 + 1 U---GAACAAGUCCUUAGGAUUUAAGUACGUCUGCUGCUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUUAGGUAUUUACAU----AUGAUCGA-AAGAGCUUUAGU .---.((((((..(((((((((..((((....))))...)))))))))....))))))..((((((......))))))...----....((..-..))........ ( -14.50) >DroYak_CAF1 7304 99 + 1 A---GUACAAGUUCUUAGGACUUUAGUACGUCUGCUGGUAGUUUAAAGAUAUUUUCUAAUUUAAUAAUAAGGUAUAUACAU----AUAUUUGAAAAGAGCUUGAGU .---...(((((((((.(((((((((((....)))))).)))))..(((.....)))............(((((((....)----))))))...)))))))))... ( -18.40) >consensus GGAUAAAAAAGUCCUUAGGAUUUAAGUACGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGAGCUUUAGU .......(((((.(((((((((..((((....))))...)))))))))((((((((((((...)))))))))))).......................)))))... (-13.24 = -14.04 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006