Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,595,405 – 9,595,519 |
Length | 114 |
Max. P | 0.644975 |
Location | 9,595,405 – 9,595,519 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.35 |
Mean single sequence MFE | -39.08 |
Consensus MFE | -24.26 |
Energy contribution | -25.80 |
Covariance contribution | 1.54 |
Combinations/Pair | 1.34 |
Mean z-score | -1.86 |
Structure conservation index | 0.62 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9595405 114 - 27905053 CUUCGGAGUGCUACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUCAAUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCGCUUGGUAGUGCUAGUAGUUGG ...(.((.(((((((((((((.((..((((((((((.(((((.(((.(..((.((....))))..).))).))))))))))).))))..)).).))))))))...)))).)).) ( -42.80) >DroSec_CAF1 1586 114 - 1 CUUUGGAGUGCCACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG .....(((...(((((((((..((..((((((((((.(((((.(((.(..((((....)).))..).))).))))))))))).))))..))...))))))))))))........ ( -43.00) >DroSim_CAF1 1584 114 - 1 CUUUGGAGUGCCACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG .....(((...(((((((((..((..((((((((((.(((((.(((.(..((((....)).))..).))).))))))))))).))))..))...))))))))))))........ ( -43.00) >DroEre_CAF1 2862 114 - 1 CUUUUGAGUGCUACUGCCAGCAGUUGGAACAGGAACUGGGGCGGAUGUUGGCUUAACAGGACUUGAAGUAGGUUUCGGUUUGGGCUUUGGUCUUUUGGUAGUGCUCAUAGUUGG ....((((..((((((((((.((((.((((.((((((....((..(.(((......))).)..)).....)))))).)))).))))))))).....)))))..))))....... ( -37.00) >DroYak_CAF1 2855 114 - 1 CUUCUGAGUGCUACUGCCAACAGUUGGCACAGGACCUGGAGCGGAUGUUGGGCUUACAAGACUUGAAGUUGGUUUCGGUUUUGGUUUUGGUCUUUUAGUGGUGCUCGUAGUUGG .....(((..(((((((((.....)))).(((((((.(((((.(((.(..((((....)).))..).))).)))))))))))).............)))))..)))........ ( -39.20) >DroAna_CAF1 2936 108 - 1 UUUGGGGGUGCUGCUACCCAAAGAUGGCACAGGUGCUAAAGUG------GUGCUAACUGAACUAGAUGUUGGCUGGGGUUUUGGCUUAGGUCUGCGAGUGGUAGUGGUUGUUGG .........((..((((((..((.((((((....((....)).------)))))).))....(((((.(.(((..(....)..))).).)))))...).)))))..))...... ( -29.50) >consensus CUUUGGAGUGCUACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG .....((.((((((((((((.(((..((((..((.(((((((.(((.(..((((....)).))..).))).))))))).))..))))..).)).)))))))))...))).)).. (-24.26 = -25.80 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:53 2006