Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,588,678 – 9,588,777 |
Length | 99 |
Max. P | 0.534515 |
Location | 9,588,678 – 9,588,777 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.56 |
Mean single sequence MFE | -15.04 |
Consensus MFE | -11.87 |
Energy contribution | -12.20 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.79 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9588678 99 - 27905053 ACCCCACUCCAUCUGACUUUCGAUUUUUCGUAGUCCUUUCGCAACAGAUACAUACGAGUAUAUGUAUAUAACGCCCCUCUUCCCAAAAAACUCAGUCAC ..............((((..(((....))).)))).....((.....(((((((......))))))).....))......................... ( -12.00) >DroSec_CAF1 64931 97 - 1 ACCCCG--CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUCUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC .....(--(.....((((..(((....))).)))).....))...(((((((((......)))))))))...(((...................))).. ( -15.11) >DroSim_CAF1 75129 97 - 1 ACCCCG--CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUGUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC .....(--(.....((((..(((....))).)))).....))...((((((((((....))))))))))...(((...................))).. ( -18.01) >consensus ACCCCG__CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUAUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC ..............((((..(((....))).))))..........(((((((((......))))))))).............................. (-11.87 = -12.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:49 2006