Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,579,893 – 9,579,987 |
Length | 94 |
Max. P | 0.751647 |
Location | 9,579,893 – 9,579,987 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -22.47 |
Energy contribution | -23.42 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.27 |
Mean z-score | -1.50 |
Structure conservation index | 0.70 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9579893 94 + 27905053 AGGUGUACCAGCAAUAAUUCUCUGCCCUUAAGCAGUGAAAACGAGUCCGUGGAAUUCCGCCAGAGAUCGGACUCCGAAUUGGAUCGCCAGCGUU .((((..((((......(((.((((......)))).)))...((((((((((....))))..(....)))))))....))))..))))...... ( -30.80) >DroGri_CAF1 69767 83 + 1 C--C---CCAGCAACAAUUCAUUGCC------CAGUGAAAAUGAAUCCGUGGAGUUUCGUCAGCGUUCCGACUCGGAGCUGGAGCGCCAGCGUU .--.---(((((.....((((((...------.))))))......((((.(..(...((....))...)..).)))))))))((((....)))) ( -23.80) >DroEre_CAF1 59023 94 + 1 AGGUGUACCAGCAACAAUUCCCUGCCCUUAAGCAGUGAAAAUGAGUCCGUGGAAUUCCGCCAGAGAUCGGACUCCGAAUUGGAUCGCCAGCGUU .((((..((((......(((.((((......)))).)))...((((((((((....))))..(....)))))))....))))..))))...... ( -29.70) >DroYak_CAF1 56752 94 + 1 AGGUGUACCAGCAAUAAUUCCCUGCCCUUAAGCAGUGAAAAUGAGUCCGUGGAAUUCCGCCAGAGGUCGGACUCCGAGUUGGAUCGCCAGCGUU .((((..(((((.....(((.((((......)))).)))...((((((((((....))))..(....)))))))...)))))..))))...... ( -33.80) >DroMoj_CAF1 66585 88 + 1 CGGCCGCCCAGCAACAACUCGCUGCC------CAGCGAGAGCGAGUCCGUUGAGUUCCGCCAGCGCUCCGACUCCGAGCUGGAGCGCCAGCGCU .(((.(((((((.....((((((...------.)))))).(.((((((((((.(.....))))))....))))))..))))).)))))...... ( -38.60) >DroAna_CAF1 64580 94 + 1 AGGUGCACCAGCAACAACUCUCUGCCCCUGAGCAGCGAGAACGAAUCUGUGGAGUUCCGGCAGAGAUCGGACUCGGAGCUGGAUCGCCAGCGAU .((((..(((((.........((((......))))((((..(((.(((((((....)).)))))..)))..))))..)))))..))))...... ( -36.80) >consensus AGGUGUACCAGCAACAAUUCCCUGCCCUUAAGCAGUGAAAACGAGUCCGUGGAAUUCCGCCAGAGAUCGGACUCCGAGCUGGAUCGCCAGCGUU .((((..(((((.....(((.((((......)))).)))...((((((((((....))))........))))))...)))))..))))...... (-22.47 = -23.42 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:47 2006