Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,558,742 – 9,558,843 |
Length | 101 |
Max. P | 0.738836 |
Location | 9,558,742 – 9,558,843 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.26 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -19.57 |
Energy contribution | -19.57 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.17 |
Structure conservation index | 0.66 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9558742 101 - 27905053 GUGUGUUUGUGGAAUUGGAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCAGAAUGUCAUAGCCCUAAUUGCCCAGGAGCACACACACAC--ACGCAGUGC ((((((((((..(((((....))))).)---))).((((((..((.((((......)))).)).....(((........))).))))))))))))--......... ( -32.30) >DroPse_CAF1 34554 102 - 1 GUCUGCUUGUGGAAUUGGAAACAAUUAGCAGCAGAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACAUAAGCACACACACA---- .((((((.((..(((((....))))).))))))))((((((.......((((.((.(.....)...)).)))).(((......))).....)))))).....---- ( -32.50) >DroGri_CAF1 44263 91 - 1 GUGAGCGUGUGCAAUUGAAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAA--GCAUACAG------UCGCA---- ((((..(((((((((((....))))).(---((.....))).((.(..((((.((.(.....)...)).))))...)))..--))))))..------)))).---- ( -23.30) >DroEre_CAF1 37008 95 - 1 GU--GUUUGUGGAAUUGGAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAGGAGCACACAC------ACGCAGUGC ((--((((((..(((((....))))).)---))).((((((..((.((((......)))).)).....(((........))).))))))))------))....... ( -28.10) >DroWil_CAF1 39633 95 - 1 GGGUGUUUGUGCAAUUGGAAACAAUUAG---CAAAGUGUGCUGGAGAUUUAGAGCGGAAUGUCAUGGCCCUAAUUGCCCAGGAGCGCUCACACAU------ACU-- ((((((((.((((((((....))))).)---)).......((((.(..((((.((...........)).))))...)))))))))))))......------...-- ( -28.40) >DroPer_CAF1 34599 100 - 1 GUCUGCUUGUGGAAUUGGAAACAAUUAGCAGCAGAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACAUAAGCACA--CACA---- .((((((.((..(((((....))))).))))))))((((((.......((((.((.(.....)...)).)))).(((......))).....)))))--)...---- ( -32.50) >consensus GUGUGCUUGUGGAAUUGGAAACAAUUAG___CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACACAC_CAC__ACGCA____ .......((((.(((((....))))).........((((((.((.(..((((.((.(.....)...)).))))...)))....)))))).........)))).... (-19.57 = -19.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:43 2006