Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,557,722 – 9,557,816 |
Length | 94 |
Max. P | 0.974561 |
Location | 9,557,722 – 9,557,816 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 70.56 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -17.06 |
Energy contribution | -17.66 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.30 |
Mean z-score | -2.10 |
Structure conservation index | 0.51 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9557722 94 + 27905053 CGUCUGCUGGUGAGCCCAGCU---CCACGGAGGAUGCA----UGUAUAUGCUCCUCCUG----UUGGCCAAACUGUCAAAGGUGGUCGCCGUAAUUGGCGAAAUA .....(((((.....))))).---((((((((((.(((----(....))))))))))..----(((((......)))))..))))((((((....)))))).... ( -39.20) >DroSec_CAF1 34373 79 + 1 ---------------CCAGCU---CCACGGAGGAUGCA----UGUAUGUGCUCCUCCUG----UUGGCCAAACUGUCAAAGGUGGUCGCCGUAAUUGGCGAAAUA ---------------......---((((((((((.(((----(....))))))))))..----(((((......)))))..))))((((((....)))))).... ( -32.50) >DroEre_CAF1 36016 95 + 1 CG---GUUGGCGAACCAACCU---CCAUGGAGGAUACCCAUGUAUAUGUGCCCCUCCUG----UUGGCCAAACUGUCAAAGGUGGUCGCCGUAAUUGGCGAAAUA .(---(((((....)))))).---.(((((.(....))))))..........((.(((.----(((((......)))))))).))((((((....)))))).... ( -32.90) >DroWil_CAF1 38713 101 + 1 CCGCUGCUCACAAAAGUACCUUGUCAGUGACGGGUGCU----GAUGCCGGUGGCUCCUGGUGACUGGUCUCGCUGUCAGAGUUGGUUCAUGUAAUUGGCAAAAUA ..((.((.......(((((((.(((...))))))))))----((.((((((.((.....)).)))))).)))).))....((..(((.....)))..))...... ( -29.50) >DroYak_CAF1 34649 91 + 1 CG---GUUGGCGAACCCACCU---CCAUGGAGGAUGCC----UACAUGUGCUCCUCCUG----UUGGCCAAACUGUCAAAGGUGGUCGCCGUAAUUGGCGAAAUA ((---((((((((..((((((---.((.((((((.(((----.....).))))))))))----(((((......))))))))))))))))..)))))........ ( -34.00) >consensus CG___GCUGGCGAACCCACCU___CCAUGGAGGAUGCA____UAUAUGUGCUCCUCCUG____UUGGCCAAACUGUCAAAGGUGGUCGCCGUAAUUGGCGAAAUA ........................((((((((((.((............))))))))......(((((......)))))..))))((((((....)))))).... (-17.06 = -17.66 + 0.60)
Location | 9,557,722 – 9,557,816 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 70.56 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -12.40 |
Energy contribution | -13.08 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.41 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9557722 94 - 27905053 UAUUUCGCCAAUUACGGCGACCACCUUUGACAGUUUGGCCAA----CAGGAGGAGCAUAUACA----UGCAUCCUCCGUGG---AGCUGGGCUCACCAGCAGACG ....(((((......)))))............((((..(((.----..((((((((((....)----))).)))))).)))---.(((((.....))))))))). ( -37.90) >DroSec_CAF1 34373 79 - 1 UAUUUCGCCAAUUACGGCGACCACCUUUGACAGUUUGGCCAA----CAGGAGGAGCACAUACA----UGCAUCCUCCGUGG---AGCUGG--------------- ....(((((......)))))..........((((....(((.----..(((((((((......----))).)))))).)))---.)))).--------------- ( -29.60) >DroEre_CAF1 36016 95 - 1 UAUUUCGCCAAUUACGGCGACCACCUUUGACAGUUUGGCCAA----CAGGAGGGGCACAUAUACAUGGGUAUCCUCCAUGG---AGGUUGGUUCGCCAAC---CG ....(((((......)))))(((((...........))....----..((((((((.(((....))).)).)))))).)))---.((((((....)))))---). ( -31.60) >DroWil_CAF1 38713 101 - 1 UAUUUUGCCAAUUACAUGAACCAACUCUGACAGCGAGACCAGUCACCAGGAGCCACCGGCAUC----AGCACCCGUCACUGACAAGGUACUUUUGUGAGCAGCGG .....((((.......(((.....(((.......))).....)))...((.....))))))..----.....((((..((.(((((.....))))).))..)))) ( -19.70) >DroYak_CAF1 34649 91 - 1 UAUUUCGCCAAUUACGGCGACCACCUUUGACAGUUUGGCCAA----CAGGAGGAGCACAUGUA----GGCAUCCUCCAUGG---AGGUGGGUUCGCCAAC---CG ...............(((((((((((((....(((.....))----).((((((((.......----.)).))))))..))---))))))..)))))...---.. ( -33.20) >consensus UAUUUCGCCAAUUACGGCGACCACCUUUGACAGUUUGGCCAA____CAGGAGGAGCACAUAUA____GGCAUCCUCCAUGG___AGGUGGGUUCGCCAAC___CG ....(((((......)))))............................((((((((............)).))))))............................ (-12.40 = -13.08 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:42 2006